barSeed - Barley Seed Development Database

Probe CUST_8100_PI390587928

Source Contig U35_41505

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8100_PI390587928	Hv_44K_v2	AAAGAATTCTACGCCATAATCTACCCCTACTTGCAACAAATTGAGGAGAACGTCAGCGGC	276	GeneList: floralwhite MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.315	0.494	2.010	2.240	1.090	0.962
Raw	4.378	10.774	43.458	76.091	13.332	12.488

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC07395	1508	8e-21	523 - 577	98	54 / 55	plus	ABC07395
Harvest35	U35_41505	469	3e-25	277 - 336	100	60 / 60	plus
Harvest35	U35_17031	1531	8e-21	539 - 593	98	54 / 55	plus

Contig Sequence (469 bp)

>U35_41505 469 Hv_44K_v2
CTCAGGGGCTCCCTCAAGGCCCTCGAAGCCGATATCCACCACGCCAACACCCTGGCGCAT
GCTATCCACAGGGCCTATGGCGGCACCTGCGTGCAGATGAGGCTGTCCTACAGCTCCATG
GCTCCAATCATCCTCAACCTTATCCAGTGGATGGACTGCAGCTGCTCCCTCTCCTACACC
CTCCCCAGCTACCTGGGCCTCCTGGAGGTTCTTGTCTACAAGGTTTATGTTGATGGGGAT
GCATCCATATCCACCATAGAAAGGCGAGCGAGCCTCAAAGAATTCTACGCCATAATCTAC
CCCTACTTGCAACAAATTGAGGAGAACGTCAGCGGCGGCCGGAAGCTTTACGCCGGTGAC
AAGGACGCCGAGAGGGAAGATGAGTGCGGCATTTGCTTGGAGACCTGCACCAAGATGGTC
CTTCCCAACTGCAACCATGCCATGTGCATCAACTGTTACCGAGATCTTG

Homology of Contig U35_41505 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g67850.1	253	3e-98	protein\|zinc finger, RING-type, putative, expressed
Brachypodium v1_2	Bradi2g58040.1	251	5e-103
Arabidopsis v10	None