barSeed - Barley Seed Development Database

Probe CUST_80_PI415269222

Source Contig TA32559_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_80_PI415269222	Hv_44K_v2	GTGTGCATGCAATCCTCTAGTGGAAGCCAAGACATGTATGTATGGCTTTTTATGCAATAC	1208	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361150	1440	3e-22	1237 - 1295	98	59 / 60	plus	ABC03239 ABC03241 ABC03243 ABC39533 ABC42502
MLOC	MLOC_39593.1	237	3e-22	156 - 214	98	59 / 60	plus	ABC03239 ABC03243 ABC39533
JLOC1	JLOC1_25822.1	341	1e-22	161 - 219	98	59 / 60	plus
Harvest21	ABC03239	1348	5e-23	1223 - 1281	98	59 / 60	plus	ABC03239
Harvest35	U35_1034	726	5e-23	632 - 690	98	59 / 60	plus
Harvest35	U35_1033	658	5e-23	575 - 633	98	59 / 60	plus

Contig Sequence (1271 bp)

>TA32559_4513 1271 Hv_44K_v2
AGAAGAACACACTGATAAATTTGTAAGCCATTATGGCTTCCAGCTCCAGCCGTAAGGCAT
GGCATTGCTTGCTTACCCTCTTCCTCCTTTCTTCCGGTGCGTATGGGCAGCTCTCACCGT
CATTCTACGCGAGGAGCTGCCCGACGTTGCAGCTCATCGTGCGCGCCACCATGATCAAGG
CGGTCCTCGTCGAGCGCCGGATGGGCGCGTCCCTCCTCAGGCTCCACTTCCATGACTGCT
TTGTTCAAGGCTGTGACGGGTCCATTCTCTTGGATGACGTGGGTAGCTTCGTGGGCGAGA
AGACGGCCCCCGGGAACAATAACTCGGTGCGGGGCTACGAGGTGATCGACCAGATCAAGC
GGAACGTGGAGCTGCTCTGCCCCGGCATCGTCTCCTGCGCCGACATCGCCGCCCTCGCAG
CACGGGACGGCACGGTGCTGCTAGGCGGGCCCACCTGGGCGGTGCCGCTCGGCCGGCGCG
ACTCGACGACGGCCAGCATGGCGGAGGCGACCACCGACCTCCCGCCGCCCAGCTTCGACC
TGACCATGCTCATCCAGGCGTTCGAGAAGAAGCAGCTGTGCCCGCGCGACCTCACGGCGC
TCTCCGGCGCGCACACCATCGGCTTCTCGCAGTGCGCCAACTTCCGCGACCACATCTACA
ACGGCACCAACGTCGACCCGGCGTTCGCCGCGCTGCGCAAGCGCACCTGCCCCGCCCAGC
CGCCCAACGGCGACATGAACCTGGCGCCGTTCGACGTGCAGACGCAGCTCGTCTTCGACA
ACGCCTACTACTCCAACCTGGTCGCCAAGCGCGGCCTGCTCAACTCCGACCAGGTGCTCT
TCAACGGCGGCTCCCAGGACGCGCTGGTCAGACAGTACGTCGCTAACCCGGCGCTCTTCG
CCTCCGACTTTGTGACGGCGATGATCAAGATGGGGAACATCAAGCCGCTCACCGGAACCG
CCGGCCAGATTAGGCGCAACTGCAGGGTCGTCAACAGCTGATCGGTCCGTCGTCTCATCA
TTTATACGTGGTAGATGTATATATGTGCTTAAAATGTGTACGTGAAGTTAGGTTGGCTAC
GTACCAACCAGGTAGCATGCATGTCAGAATAAGAGCCGTTTGGTTCAGATAATGCATAGG
TAAGTAGCCCTCAAGCTCCAGGGTTGTAAGATAGTTGCTTCACCCAACTATTTAAGTCGC
TCCAGCTCGTGTGCATGCAATCCTCTAGTGGAAGCCAAGACATGTATGTATGGCTTTTTA
TGCAATACTTG

Homology of Contig TA32559_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g14430.1	328	5e-168	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi3g09120.1	320	0.0
Arabidopsis v10	AT5G05340.1	324	5e-118	Peroxidase superfamily protein \| chr5:1579142-1580819 REVERSE LENGTH=324