- Probe CUST_8083_PI390587928
- Source Contig U35_15246
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_8083_PI390587928 | Hv_44K_v2 | TGCAAAAAGGCGCCCTTTCTACCCGCCTAGGCATTCCGATGATCTACGGTATTGATGCTG | 503 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_71312.2 | 657 | 7e-23 | 33 - 92 | 98 | 59 / 60 | minus | ABC03391 |
| MLOC | MLOC_71312.1 | 972 | 7e-23 | 40 - 99 | 98 | 59 / 60 | minus | ABC03391 |
| MLOC | MLOC_71312.3 | 805 | 7e-23 | 33 - 92 | 98 | 59 / 60 | minus | ABC03391 |
| MLOC | AK250051.1 | 2180 | 3e-21 | 481 - 540 | 97 | 58 / 60 | plus | ABC03391 ABC04970 ABC39054 ABC39160 |
| MLOC | AK251544.1 | 2302 | 3e-21 | 603 - 662 | 97 | 58 / 60 | plus | ABC03391 ABC04970 ABC39054 ABC39160 |
| MLOC | MLOC_28516.4 | 625 | 3e-21 | 154 - 210 | 98 | 56 / 57 | plus | ABC03391 |
| MLOC | MLOC_28516.3 | 699 | 3e-21 | 161 - 217 | 98 | 56 / 57 | plus | ABC03391 |
| MLOC | MLOC_28516.1 | 877 | 3e-21 | 345 - 401 | 98 | 56 / 57 | plus | ABC03391 |
| MLOC | MLOC_28516.2 | 873 | 3e-21 | 341 - 397 | 98 | 56 / 57 | plus | ABC03391 |
| JLOC1 | JLOC1_47389.2 | 872 | 4e-23 | 580 - 639 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_47389.1 | 968 | 4e-23 | 676 - 735 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_19125.1 | 411 | 2e-21 | 174 - 230 | 98 | 56 / 57 | plus | |
| Harvest21 | ABC03391 | 2310 | 1e-23 | 461 - 520 | 98 | 59 / 60 | plus | ABC03391 |
| Harvest35 | U35_15246 | 563 | 3e-25 | 504 - 563 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_15245 | 2327 | 1e-23 | 469 - 528 | 98 | 59 / 60 | plus |
Contig Sequence (563 bp)
>U35_15246 563 Hv_44K_v2 TCGAGCACTGTTGGCCCTGGACACTTCTCCTTCCCAGGCAAGGCAGCAACACGCTAGACA TCTTTTTGCCGGTTTCATCTTGCTCTTGCCGGAAGGTATCATCGGTGTCCTGAGTTCGTG TTTCGTGCGCATGCGGCGGATTGCTTGCTGCCCCTTTTGAGGTCTATATATACAGTCGGT GGTGATCGGTACCAGACACAGTGCCAAGATGGGGAGCTTCCACAAGACCACCTTTGTTCT CCTCATGTTCTGCTTGGTGGCGTTGGGAAGCGCGGATTATCTCAAGTACAAGGATCCGAA GCAGCCTCTTGGCGTTCGCATCAAGGATCTGCTTGGTCGGATGACTCTCGCTGAAAAGAT AGGCCAGATGACCCAGATTGAGAGGGAGAATGCCACGGCAGAGGCCATGTCCAAGTACTT CATAGGTAGCGTACTGAGTGGTGGAGGCAGTGTGCCTTCTCCTCAAGCATCCGCTGCGGC TTGGCAGTCGATGGTGAATGAAATGCAAAAAGGCGCCCTTTCTACCCGCCTAGGCATTCC GATGATCTACGGTATTGATGCTG
Homology of Contig U35_15246 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |