barSeed - Barley Seed Development Database

Probe CUST_8082_PI390587928

Source Contig U35_15247

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8082_PI390587928	Hv_44K_v2	GCAGTGTGCCTTCTCCTAAGCATCCGCTGCGGCTTGGCAGTCGATGGTGAATGAAATGCA	413	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250051.1	2180	7e-23	424 - 484	98	60 / 61	plus	ABC03391 ABC04970 ABC39054 ABC39160
MLOC	AK251544.1	2302	7e-23	546 - 606	98	60 / 61	plus	ABC03391 ABC04970 ABC39054 ABC39160
MLOC	MLOC_71312.2	657	7e-23	89 - 149	98	60 / 61	minus	ABC03391
MLOC	MLOC_71312.1	972	7e-23	96 - 156	98	60 / 61	minus	ABC03391
MLOC	MLOC_71312.3	805	7e-23	89 - 149	98	60 / 61	minus	ABC03391
MLOC	MLOC_48661.2	913	3e-21	405 - 462	98	57 / 58	plus	ABC03391
JLOC1	JLOC1_47389.2	872	4e-23	523 - 583	98	60 / 61	plus
JLOC1	JLOC1_47389.1	968	4e-23	619 - 679	98	60 / 61	plus
Harvest21	ABC03391	2310	1e-23	404 - 464	98	60 / 61	plus	ABC03391
Harvest35	U35_15247	509	3e-25	414 - 473	100	60 / 60	plus
Harvest35	U35_15246	563	1e-23	447 - 507	98	60 / 61	plus
Harvest35	U35_15245	2327	1e-23	412 - 472	98	60 / 61	plus

Contig Sequence (509 bp)

>U35_15247 509 Hv_44K_v2
GTCCTCCGATCTGTGCTGTGTGGTCCGCTGCGCAGCACCGAGAGCTCGCCATCCCCGTGA
CTCGCGGCCTCCCGCCGCACGCCGCCGCCTCGCCCGGCCGGCCGTCCGTCACCGTGGTAA
ACTGACTGGTCTATATATACAGTCGGTGGTGATCGGTACCAGACACAGTGCCAAGATGGG
GAGCTTCCACAAGACCACCTTTGTTCTCCTCATGTTCTGCTTGGTGGCGTTGGGAAGCGC
GGATTAACTCAAGTACAAGGATCCGAAGCAGCCTCTTGGCGTTCGCATCAAGGATCTGCT
TGGTCGGATGACTCTCGCTGAAAAGATAGGCCAGATGACCCAGATTGAGAGGGAGAATGC
CACGGCAGAGGCCATGTCCAAGTACTTCATAGGTAGCGTACTGAGTGGTGGAGGCAGTGT
GCCTTCTCCTAAGCATCCGCTGCGGCTTGGCAGTCGATGGTGAATGAAATGCANAGGGTG
CCCTTCTACCGCCTAGCATTCCATGATCT

Homology of Contig U35_15247 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None