barSeed - Barley Seed Development Database

Probe CUST_8059_PI390587928

Source Contig U35_39208

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8059_PI390587928	Hv_44K_v2	ACAAATTGTACTCGACCATATGCCTGTGAAGATTTATATGGCCAATTAAGATAGACTCTG	21	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68844.3	3243	2e-24	2707 - 2766	100	60 / 60	plus	ABC13556 ABC35232
MLOC	MLOC_68844.2	3550	2e-24	3012 - 3071	100	60 / 60	plus	ABC13556 ABC35232
MLOC	MLOC_68844.4	3732	2e-24	3196 - 3255	100	60 / 60	plus	ABC13556 ABC35232
MLOC	MLOC_68844.1	4453	2e-24	3918 - 3977	100	60 / 60	plus	ABC13556 ABC35232
JLOC1	JLOC1_45591.2	3322	8e-25	649 - 708	100	60 / 60	minus
JLOC1	JLOC1_45591.1	3848	8e-25	649 - 708	100	60 / 60	minus
JLOC1	JLOC1_45590.1	4054	8e-25	3347 - 3406	100	60 / 60	plus
Harvest21	ABC35232	452	3e-25	22 - 81	100	60 / 60	minus	ABC35232
Harvest35	U35_39208	452	3e-25	22 - 81	100	60 / 60	minus

Contig Sequence (452 bp)

>U35_39208 452 Hv_44K_v2
TTTTTTTTTTTTTTTTTAATACAGAGTCTATCTTAATTGGCCATATAAATCTTCACAGGC
ATATGGTCGAGTACAATTTGTTTCTTGAGGTAGAATTCTTATGCACATGTATACAAAATT
TGTAGCCACGGCCGACGGCAACATGGGTGGTTCGGTCGCTGCGGCGTTGAAACGAATTAT
CCTGTAGACTGAAAACAAAGGGGCAGGTGCACTGTCGCGTAATAGAAAGGAAAAGAAGTA
AAGGTTGCACCACACAGTGACGGCCGGGGAATTTAAAACGCCGTGTTGCCGGCACGTGCG
AGCGCTTGGCCCCCACCAAACCGCCATTCTCAGGGCTTCCTCCCTTGGTGCTGCGTCGTG
CGGTGCCTTCCCTTACAATGGTCGATGGAATCTCGGCCGGTTGACCGCCCACTCCCACAG
CCCCCGGCCTCCGATCGAGCAAGAACGCAGCC

Homology of Contig U35_39208 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None