barSeed - Barley Seed Development Database

Probe CUST_8013_PI390587928

Source Contig U35_24616

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8013_PI390587928	Hv_44K_v2	ATCCAGCTCGGCCTCGCCGAGAACCACCTCTCCCTGGATTTGGTGAGGGAATGGATGGAG	329	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353643	2294	2e-24	523 - 582	100	60 / 60	plus	ABC09131 ABC49794
MLOC	MLOC_22739.1	752	2e-24	414 - 473	100	60 / 60	plus	ABC09131 ABC49794
JLOC1	JLOC1_15756.1	744	8e-25	412 - 471	100	60 / 60	plus
Harvest21	ABC19147	388	1e-24	330 - 388	100	59 / 59	plus
Harvest35	U35_24616	389	3e-25	330 - 389	100	60 / 60	plus

Contig Sequence (389 bp)

>U35_24616 389 Hv_44K_v2
TGGTGCAGGGCCGCGGGGGCCTCGTCCTCGGCTCCCTCATCCCCTGCGCCCTCTTCTACT
TCCTCCAGCTCTACATCAAGCGCAACCGCCCGCCCCCAGGCTCCCCCACTTCGGCCTCCT
CCTCCTCCGCCGCCGCGCCCCCCTCCGCGGGCCCGCTCTCCCCGATCCACCGCTCCCTCT
CGCGGGGCCTGCTCTCCCCGCGCGCGCTCCCGGCGCTCTCCATCCGCGGCGCCGTCGTCC
GCGCCGGGGACGAGGACTCCCTCTACTACGCCGGCCTCCGCCGCTGCGCCGACGACCCCT
ACCACCCCGCCTCCAACCCCGCCGGCGTCATCCAGCTCGGCCTCGCCGAGAACCACCTCT
CCCTGGATTTGGTGAGGGAATGGATGGAG

Homology of Contig U35_24616 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None