barSeed - Barley Seed Development Database

Probe CUST_7983_PI390587928

Source Contig U35_12650

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7983_PI390587928	Hv_44K_v2	AGAGGCTCCTCAGCTTAACTCTCAGCTAGTCCCGGCCATGAAGAAAGTGCATGCGGCGTT	421	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10669.2	1382	2e-24	450 - 509	100	60 / 60	plus	ABC15553
MLOC	MLOC_10669.1	2015	2e-24	608 - 667	100	60 / 60	plus	ABC15553 ABC18116
JLOC1	JLOC1_6998.1	2196	8e-25	538 - 597	100	60 / 60	plus
Harvest21	ABC26500	546	3e-25	422 - 481	100	60 / 60	plus
Harvest35	U35_12650	547	3e-25	422 - 481	100	60 / 60	plus

Contig Sequence (547 bp)

>U35_12650 547 Hv_44K_v2
CAAGGCCCAAGCTAGCTAGCTCCACTATGCAGACCACCGAGCGCATGGCGCTCACCAGTC
ACCTCCTGGCCGTCCTCCTCGGCATCGCAGTGCCGCTGCTCTTCTCCCCCCGTGCAGAGG
GTGGCGAGGTAGGCGTGTGCTATGGGAGGATGGCGGGTAACCTGCCTGACCCGACGTCTG
TGGTTCAACTTATCAAGAGAAACGGCATCACGATGGTGAGGATCTACGACACCAACCCAA
CGGTGCTGGCCGCCCTGGCCAACACCGACATCAAGGTGACGGTGGAGCTGACCAACGAGG
AGCTGCCGCTGGTGGCGGCGGACGAAAATGACTTCGCGTTCCGGTGGGTGCAGAGCAACG
TGAAGGCCTACTATCCGGCCACGCTGATCAATGGCGTGACGATCGGGAACGAGGTCTTCA
AAGAGGCTCCTCAGCTTAACTCTCAGCTAGTCCCGGCCATGAAGAAAGTGCATGCGGCGT
TGGATCGCCTGGGCCTGGCGGACGCCGTGAATGTGACCACGCCCATCGCATTCGACGCGC
TCATGAC

Homology of Contig U35_12650 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g35350.3	456	2e-61	protein\|glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g25530.1	549	9e-57
Arabidopsis v10	None