barSeed - Barley Seed Development Database

Probe CUST_7918_PI390587928

Source Contig U35_36627

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7918_PI390587928	Hv_44K_v2	CTGTGGAACTTAATACCAGTAAATTTGGGAATATTATATTTTGGTAGCTGCGTTGTAGGA	16	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37707.2	1387	2e-24	965 - 1024	100	60 / 60	plus	ABC01503 ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC01516 ABC42085
MLOC	AK248169.1	1707	3e-22	1649 - 1707	98	58 / 59	plus	ABC01503 ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC01516 ABC42085
JLOC1	JLOC1_24445.1	1392	8e-25	1207 - 1266	100	60 / 60	plus
Harvest21	ABC31756	614	3e-25	17 - 76	100	60 / 60	minus
Harvest21	ABC01503	1868	1e-23	1807 - 1866	98	59 / 60	plus	ABC01503
Harvest35	U35_36627	614	3e-25	17 - 76	100	60 / 60	minus

Contig Sequence (614 bp)

>U35_36627 614 Hv_44K_v2
TTTTTTTTTTTTTTTTTCCTACAACGCAGCTACCAAAATATAATATTCCCAAATTTACTG
GTATTAAGTTCCACAGTTACGCTAATATAATAACACAATTCGCACCAAAGCACCATCGAC
ATACAAAAAACAGTTTAAAAAAATCGATTCGCCGAAGCACCAAAAGCATCTATAAGTGTT
ATCGACCACCTAAAGATCTATCCGCACCACAAGCACCCCCAAATCGACAGCAATAGTAAA
CACAAGGCACATCTACCAGACCGCACGACGACGGAACAAGGTCAGGTGGCTTAGGCAGCA
ACCTCATCATCCTCCTCCTCCTCGTACTCTTCCTCCTCGTCGGCTGTGGCATCCTGGTAC
TGCTGGTACTCAGCAACCAGATCGTTCATGTTGCTTTCGGCCTCGGTGAACTCCATCTCG
TCCATGCCCTCCCCGGTGTACCAGTGCAAGAAAGCCTTCCTCCTGAACATGGCCGTGAAC
TGCTCGCTCACACGGCGGAACATCTCCTGGATGGAGGTGGAGTTGCCAACAAAGGTGGAC
GACATTGACAGGCCTGTGGGAGGGATGTCACACACGCTTGACTTGACATTGTTGGGTATC
CACTCAACGAAGTA

Homology of Contig U35_36627 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g34170.2	445	2e-52	protein\|tubulin/FtsZ domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g05010.1	446	7e-54
Arabidopsis v10	AT1G75780.1	447	9e-53	\| Symbols: TUB1 \| tubulin beta-1 chain \| chr1:28451378-28453602 REVERSE LENGTH=447