barSeed - Barley Seed Development Database

Probe CUST_7883_PI390587928

Source Contig U35_458

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7883_PI390587928	Hv_44K_v2	CTGTACTGTTTGAAAGCTTATCAAGCAAATGCTGCAAACAGATGTACAGAAATTTGTATG	1360	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.435	1.150	1.079	0.928	0.400	0.412
Raw	169.504	216.782	172.371	234.203	34.913	39.997

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370438	1348	2e-24	1266 - 1325	100	60 / 60	plus	ABC02857 ABC02858
MLOC	MLOC_56997.1	2778	2e-24	1390 - 1449	100	60 / 60	minus	ABC02857 ABC02858
MLOC	MLOC_56995.6	2358	2e-24	1802 - 1861	100	60 / 60	minus	ABC02857 ABC02858
JLOC1	JLOC1_36892.2	2123	8e-25	1299 - 1358	100	60 / 60	plus
JLOC1	JLOC1_36892.1	1650	8e-25	826 - 885	100	60 / 60	plus
Harvest21	ABC02858	781	3e-25	697 - 756	100	60 / 60	plus	ABC02858
Harvest35	U35_458	1445	3e-25	1361 - 1420	100	60 / 60	plus

Contig Sequence (1445 bp)

>U35_458 1445 Hv_44K_v2
GACACGCGGGCCAACCCCTCTCCCGCTCCCTCCCTCCGCCTCGGACCCATACGCACGCAC
GCACGCACGCACGCGACTCCTCCCTCCACCCCGACCGACACGCACCTCACCGCACCGGCG
AGCTAGGGTTCGCTCGCTCGCTCGGGCGTCCGTCCATCCATCCATCTCCGGCGGGCGGGC
GGGGCGGGCATGGCGGGGATACGGTGGCCGCCGGAGGACCCGGAGATGTTCCCGACGCGG
ATGCTGGGGACGGGGGTCTGGGGCGGGCCCCCCGCCGCGCCCGGCGAGGCGGCGTCGGAC
GACGACCGCTCCGTGGCGGCCGACTCCTGGTCCATCAAGAGCGACTACGGGAGCACGCTC
GACGACGAGCAGCGCTACGCCGACACCGCCGAGGTGCTCCTCGCCTCCTCCTCCTCCTCG
GCCGCCTCCGCCGCCGCGCCCTCCGCCTGCTCCTCCTCCCTCAGCGCCCACCACTCCTCC
GACTTCAGCTTCGACAAGGACGTGCCCGACGTCGTGCCGCCGATGCTGGGCCTGCACAAT
TACCAGGACGGCGCGTTCGCCGAAGACCTAGCCAATTACCACGAACGCAGCCACGCCGAT
GACTGGTTTGGCACCGAGGCCATGGATGTCCTTGTAGGCTGGACGAAAAACTTATGTTCC
AGCAAGGATTTGTCCGGCTGCAGCGTACTTGACATAGGAACCGGGAGCGGACGACTCTTA
CAGCAGCTTGCAAAACAAGGGTTTTCTGATCTAACTGGCATTGACTATAGTGAAGCCGCA
ATTGAGCTTGCTCGAAACCTTGCAATTCGTGATGGATTTGAGCACATTAATTTCTTGGTT
GATGATGTTCTGGAGTCGAAGTTGGAGAGGAGATTTGAACTTGTGATGGATGAAGGAACT
CTGGATGCAATAGGGCTCCACCCTGATGGACCTGTAAAGAGAATGATGTATTGGCAGTCA
GTGGCTAGCTTGGTTTCTCCTGGTGGCATACTGGTGATCACATCCTGCAGCAGGACCAAG
GATGAGCTAGTGCAGGAGGTGGAGAACTTCAATCAGAGAAAGTTGGGCGCCACGCTATCT
GAAGGAGCGCTGACCAGCGATGCTGTGGTGTTCAAGTACCTCGACCATGTGCAAGCTTAC
CCAAACGTCGATGGTGTTTGCATCGCCACCGTTGCTTTCCTGCATACATGAAATATATGT
ATATGTATCCATCCTCCCTCTCTTGTTCCTAACTTATCAGACCTGTGAGTAACAATGTAC
CCCAGGACAGCTGTTCTTCCATGGATGATAATTTACCTTGTCGGATACGTTATTCGCTAA
AAAAAAAAGTGCTTTGTTATGGCTGGGTAATACCGCATTACTGTACTGTTTGAAAGCTTA
TCAAGCAAATGCTGCAAACAGATGTACAGAAATTTGTATGCTCAAAAAAAAAAAAAAAAA
AAAAA

Homology of Contig U35_458 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g03090.1	343	1e-149	protein\|methyltransferase, putative, expressed
Brachypodium v1_2	Bradi2g01570.1	337	1e-177
Arabidopsis v10	AT1G66680.1	358	2e-88	\| Symbols: AR401 \| S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr1:24866352-24868888 REVERSE LENGTH=358