barSeed - Barley Seed Development Database

Probe CUST_7880_PI390587928

Source Contig U35_16301

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7880_PI390587928	Hv_44K_v2	CTCTCGAATATGCATGAGCATGCGTATTATATATTAAAAAAGAAGTGGCAAAAAAGCGGA	934	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363696	2591	7e-23	2493 - 2553	98	60 / 61	plus	ABC06958 ABC49629
MLOC	AK356189	2355	7e-23	2182 - 2242	98	60 / 61	plus	ABC06958 ABC49629
MLOC	MLOC_21698.1	1540	3e-21	68 - 124	98	56 / 57	minus	ABC06958 ABC49629
JLOC1	JLOC1_15052.1	1538	2e-21	1420 - 1476	98	56 / 57	plus
Harvest35	U35_16301	1010	3e-25	935 - 994	100	60 / 60	plus

Contig Sequence (1010 bp)

>U35_16301 1010 Hv_44K_v2
CTGACTTTAATCCTAAGATTTCAGATTTTGGCTTAGCAAGGTTATTTGGCAGTGACCAAT
CCCATGATATTACCAACCGTGTCGTCGGAACCTATGGATACATGTCCCCCGAGTATGCTA
TGCGTGGGAATTACTCTATCAAGTCGGACGTGTTCAGCTTCGGCGTCTTGATTTTAGAGA
TCGTCACTGGAAAAAGAAACAGTGTCGCATATGACTCCGAGCAAGCTGTAGACCTCTTAA
GTTTGGTCTGGGAGCACTGGACGATGGGAACAATTGTAGGGATCATGGATTCATCTATGA
CTAGCCATTCTCCTGGAGACCAGATGCTGAAGTGCGTGCACATCGGACTTCTGTGTGTTC
AAGAAGACCCCGCGGATAGACCGATGATGTCAGTTGTGACTGTCATGCTAAGCAGCAGCA
CTGTGTCTCTCCAAGCTCCATCTAGGCCAGCATTTTGCATCCAAAAGAGTGGCATGAACT
ACTCAGGCATGCACACAGATCCATATCCAGGAGTTTCGCATTCTACCAGCAGATCACCTA
TGTCACCAAACGAAGTTTCGATTACTGAGCTTGAGCCGAGATAAGTCCGAGCTTGATGTG
TATTCATTATGTACACCATTCTTGCCAAAATAACCTATATTGATGCAGGGAAAGACCCTA
CTTCATATGTAGTATAACTACTGGACCTTTGGGGCTAGAAAGTTACTGAGCAATAGCATA
ATACGTCATTACTAGAGAAAACCCTATCAGTAGCGTTGGTGCACGCTCTACTCGTAGGAC
GCTATAGCTAATATTTAGCGATAGCGTTATTTATGCCCAATGCTATTGGTGAACTTACAT
AGTAGTAGTGTTGGATTATCCGGCGCTACTGCTATGTATCTGCAGCGCCTGTTTCAGCGA
AGCGCTCCTGGTAAGGGCGCATCGCTTTTTCTCTCTCTCGAATATGCATGAGCATGCGTA
TTATATATTAAAAAAGAAGTGGCAAAAAAGCGGAATAAGGTGAAGTGCTA

Homology of Contig U35_16301 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g35260.1	383	2e-81	protein\|TKL_IRAK_DUF26-lc.9 - DUF26 kinases have homology to DUF26 containing loci, expressed
Brachypodium v1_2	Bradi1g25657.1	690	5e-97
Arabidopsis v10	None