barSeed - Barley Seed Development Database

Probe CUST_7877_PI390587928

Source Contig U35_16304

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7877_PI390587928	Hv_44K_v2	TGGTGGTAGAAATTTTACTGAACAATGGCATAATACGCCAGTGTAATTGTATTGTTTGGG	710	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374914	2268	2e-24	2187 - 2246	100	60 / 60	plus	ABC06958 ABC49629
MLOC	MLOC_24586.1	185	7e-23	96 - 155	98	59 / 60	plus	ABC06958
JLOC1	JLOC1_16893.1	159	4e-23	93 - 152	98	59 / 60	plus
Harvest21	ABC06958	2318	1e-23	2208 - 2268	98	60 / 61	plus	ABC06958
Harvest35	U35_16304	807	3e-25	711 - 770	100	60 / 60	plus

Contig Sequence (807 bp)

>U35_16304 807 Hv_44K_v2
GAGCAACGTTCTTTTAGACTCTGACTTTAATCCTAAGATTTCAGATTTTGGCTTAGCAAG
GCTATTTGGAAGTGACCAATCCCATGATGTCACCAACCCTGTCGTCGGAACCTACGGATA
CATGGCCCCCGAGTATGCTATGCGTGGGAGTTACTCTATCAAGTCGGACGTATTCAGCTT
CGGCGTCTTGATTTTGGAGATCGTTACTGGAAAAAGAAACAGCGTCGCATATGATTCCGA
GCAAGCTGTAGATCTCTTAAGTTTGGTCTGGGAGCACTGGACGATGGGAACAATTGTAGA
GATCATGGATTCGTCCATGACTAGCCATTCTCCTGGAGACCAGATGCTGAAGTGCATGCA
CATCGGACTTCTGTGTGTTCAAGAAGACCCAGCTGATAGACCGATGATGTCGGTTGTGAC
TGTCATGCTAAGCAGCAGCACTGTGTCTCTCCAAGCTCCATCCAGGCCAGCATTTTGCAT
CCAAAAGAGTGACATGAACTACTCAGGCATGCACACGGATCCATATCCAGGAGTTTCACA
CTCTACCAGCAGATCACCTATGTCACCAAACGAAGTTTCGATTACTGAACTTGAGCCGAG
ATAAGTCTGAGACTGATGATGTATTCATTATATATGCCATTCTTGCCAAAATAACCTATT
TTGATGCAGGGAAAGACCCTACGTCATATGTATAATAAACTCGGCCCCCTTGGTGGTAGA
AATTTTACTGAACAATGGCATAATACGCCAGTGTAATTGTATTGTTTGGGTTTTCTATTT
ATTGGATTACCGAAAAAAAAAAAAAAA

Homology of Contig U35_16304 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g35260.1	383	4e-87	protein\|TKL_IRAK_DUF26-lc.9 - DUF26 kinases have homology to DUF26 containing loci, expressed
Brachypodium v1_2	Bradi1g25657.1	690	7e-101
Arabidopsis v10	AT4G23160.1	1262	6e-52	\| Symbols: CRK8 \| cysteine-rich RLK (RECEPTOR-like protein kinase) 8 \| chr4:12129485-12134086 FORWARD LENGTH=1262