barSeed - Barley Seed Development Database

Probe CUST_7866_PI390587928

Source Contig U35_465

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7866_PI390587928	Hv_44K_v2	TTCCATTTTGCCTGCAAGTGTATGGTCAGATTCTCTTCAAATGTTATAAAAGCCCGGATC	1248	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55662.1	1410	9e-22	1 - 55	100	55 / 55	minus	ABC01919 ABC01922 ABC43138
JLOC1	JLOC1_35938.1	1544	8e-25	1340 - 1399	100	60 / 60	plus
Harvest21	ABC43138	506	3e-25	22 - 81	100	60 / 60	minus	ABC43138
Harvest21	ABC01919	1399	3e-25	1253 - 1312	100	60 / 60	plus	ABC01919
Harvest35	U35_465	1395	3e-25	1249 - 1308	100	60 / 60	plus

Contig Sequence (1395 bp)

>U35_465 1395 Hv_44K_v2
CTCTCTCCCGCCGCCACCACCCGTGCCTTCTCTTCCCCTCCGCTCTCTCGCGCACGGGGC
TCGCGTCCGAAACCCTAACCTCCCACCATGGCGGCTGAAGGCGGTGGCGTCCGGGCGCTG
TCCCAGCGCGAGCAGGACATCCAGATGATGCTCGCCGCCGACGTCCACCTCGGCACCAAG
AACTGCGATTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACGGTATTTACATT
ATCAACCTTGGCAAGACCTGGGAGAAGCTTCAGATGGCCGCAAGGGTCATTGTTGCGATT
GAAAACCCCCAGGACATCATTGTGCAATCTGCTAGGCCCTATGGACAGAGGGCTGTTCTC
AAGTTTGCCCAGTACACTGGTGCTAACGCCATTGCTGGTAGGCACACTCCTGGTACATTC
ACCAACCAGATGCAAACTTCGTTCAGTGAGCCACGCCTTCTTATCTTGACTGACCCCAGG
ACTGATCACCAGCCTATTAAGGAGTCTGCACTTGGAAACATTCCCACCATTGCCTTCTGC
GACACTGACTCTCCGATGCGTTACGTTGATATTGGCATTCCTGCTAACAACAAGGGGAAG
CAGAGCATTGGTTGCCTATTTTGGCTTCTCGCCAGAATGGTTCTGCAGATGCGTGGTACC
ATTCTCCCAGGACACAAGTGGGAAATCATGGTTGATCTGTTCTTCTACAGGGACCCAGAG
GAAGCTAAGGAGCTTGAGGAAGATGAGGCTTTGGGTGCCCCTGAGTACGCTGCAGTTGCA
GAGTACACTGCCCCAGCAGGAGATACCTGGGGTGCTGAATGGCCAGGAGCTGCAGCTCCA
GCTGCTGCTGTCGAAGCCCCGGCTGGGGCTGAGTGGACTGGTGCTCCAGCTCCTGCAGCC
GATGGATGGGATGCAGTTCCTGCACCTGCACCTACTGGCTGGGAACAGGGCAGCGCTCCA
GCACCCGCAGCAGCACCAGCAGCTACTCCGAACTGGGAATGAAGGACTTGACCCAAGGTT
TATGCTACTCAGAACTGGGGGTGAAGGAGTTAGCCCATGGTTCATGGGTGGAAGGCTGTG
TTATTTGCCGTCAGTACTCTGTTCGTAGACGCTTAAGTAGATTTAATTTTTATTACAGTA
CTGAGTTGTGTTAGATGGAAATCGATTTTTGTCTTCCGTGGCTATGCAGGGGTTGAGAGT
TCTCACCCCAGCCTTATGCCGCCTCTCATCGAATAGCTTTATTTGGAGTTCCATTTTGCC
TGCAAGTGTATGGTCAGATTCTCTTCAAATGTTATAAAAGCCCGGATCATATAAAAAAAA
AAAAAAAAACTTTATTTATGAGGCTATATTGCTTATAAAAAAAAAAAAAAAGTACCAAAG
AAAAAAAAAAAAAAA

Homology of Contig U35_465 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g42450.1	306	6e-149	protein\|ribosomal protein S2, putative, expressed
Brachypodium v1_2	Bradi1g20880.1	305	1e-148
Arabidopsis v10	AT1G72370.1	298	1e-128	\| Symbols: P40, AP40, RP40, RPSAA \| 40s ribosomal protein SA \| chr1:27243148-27244842 REVERSE LENGTH=298