barSeed - Barley Seed Development Database

Probe CUST_7862_PI390587928

Source Contig U35_469

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7862_PI390587928	Hv_44K_v2	GATCATAATGTTTGCTTGTTGGTTTGGAACCGTTGAAGTTTAGAGCTTATCGTTTGAAAA	2267	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14228.3	2028	2e-23	13 - 70	100	58 / 58	minus	ABC00044 ABC00319 ABC00326 ABC00873 ABC43426 ABC49848
MLOC	MLOC_14228.2	1214	2e-23	161 - 218	100	58 / 58	minus	ABC00044 ABC00319 ABC00326 ABC00873 ABC43426 ABC49848
MLOC	MLOC_14228.1	3110	2e-23	207 - 264	100	58 / 58	minus	ABC00044 ABC00319 ABC00326 ABC00873 ABC43426 ABC49848
MLOC	AK369055	2298	3e-22	2243 - 2298	100	56 / 56	plus	ABC00044 ABC00319 ABC00326 ABC00873 ABC43426 ABC49848
JLOC1	JLOC1_9707.1	2182	1e-23	1959 - 2016	100	58 / 58	plus
Harvest21	ABC37447	564	4e-24	20 - 77	100	58 / 58	minus
Harvest21	ABC00873	1393	5e-23	1338 - 1393	100	56 / 56	plus	ABC00873
Harvest35	U35_469	2341	3e-25	2268 - 2327	100	60 / 60	plus
Harvest35	U35_33237	638	4e-24	350 - 407	100	58 / 58	plus

Contig Sequence (2341 bp)

>U35_469 2341 Hv_44K_v2
TCGAGCACTGTTGGCCTGGCACTTCCGTCCGTTCGAAATCAAAATCAGAGAGAGAGCGAA
GCAAATCGCACCAGGCAAGCACAGAGAGCGCCGTTCCCATCCTCCAGCGAACCCCAAAGC
CAGCCAGCGAGCGAGAGATTCGTCGTAGAGAAGATGGCCAAGGGCGAGGGTCCGGCGATC
GGCATCGACCTCGGCACGACCTACTCCTGCGTCGGCGTGTGGCAGCATGACCGGGTCGAG
ATCATCGCCAACGACCAGGGCAACCGCACCACGCCCTCCTACGTCGCCTTCACCGACACC
GAGCGCCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCCACCAACACCGTC
TTCGATGCGAAGCGGCTGATTGGCAGGAGGTTCTCTGACCCGTCCGTGCAGAGTGACATG
AAGCTGTGGCCCTTCAAGGTCATCCCTGGCCCTGCCGACAAGCCCATGATCATCGTCAAC
TACAAGGGCGAGGAGAAGCAGTTTGCCGCGGAGGAGATCTCCTCCATGGTGCTCATCAAG
ATGAGGGAGATCGCCGAGGCCTTCCTCGGCAACTCCGTCAAGAACGCCGTGGTCACCGTC
CCAGCCTACTTCAACGACTCCCAGCGCCAGGCTACCAAGGACGCCGGTGCCATCGCTGGG
CTGAACGTGCTGCGCATCATCAACGAGCCCACTGCTGCTGCCATCGCCTACGGGCTTGAC
AAGAAGGCGACCAGCACTGGCGAGAAGAACGTGCTCATCTTCGACCTTGGTGGTGGCACC
TTCGATGTGTCGCTCCTGACCATCGAGGAGGGCATCTTCGAGGTGAAGGCCACCGCTGGT
GACACTCACCTGGGTGGAGAGGACTTCGACAACCGCATGGTGAACCACTTCGTCCAGGAG
TTCAAGCGCAAGCACAAGAAGGACATCAGCGGCAACCCGCGCTCCCTCCGTCGGCTCCGT
ACTGCCTGTGAGCGTGCCAAGCGCACGCTGTCGTCCACAGCCCAGACCACTATCGAGATC
GACTCGCTGTACGAGGGCGTCGACTTCTACACCACCATCACCCGGGCTCGCTTCGAGGAG
CTCAACATGGACCTCTTCCGCAAGTGCATGGAGCCGGTGGAGAAGTGCCTTCGCGACGCC
AAGATGGACAAGAGCACCGTGCACGACGTGGTGCTGGTCGGCGGCTCCACCCGTATACCC
AAGGTGCAGCAGCTGCTCCAGGACTTCTTCAACGGCAAGGAGCTGTGCAAGAGCATCAAC
CCCGACGAGGCCGTGGCGTACGGCGCCGCCGTCCAGGCCGCCATCCTGAGCGGCGAGGGC
AACGAGAAGGTGCAGGACCTGCTGCTGCTGGACGTTACGCCGCTGTCCCTGGGCCTGGAG
ACGGCCGGCGGCGTCATGACGACGCTCATCCCGAGGAACACCACCATCCCCACCAAGAAG
GAGCAGGTCTTCTCCACCTACTCGGACAACCAGCCGGGCGTCCTGATCCAGGTGTACGAG
GGCGAGCGCGCCAGGACCAAGGACAACAACCTCCTGGGCAAGTTCGAGCTGTCCGGCATC
CCCCCGGCGCCCCGCGGCGTGCCCCAGATCACGGTGTGCTTCGACATCGACGCCAACGGC
ATCCTGAACGTGTCGGCGGAGGACAAGACGACGGGGCAGAAGAACAAGATCACCATCACC
AACGATAAGGGGCGGCTGAGCAAGGAGGAGATCGAGAAGATGGTGCAGGAGGCGGAGAGG
TACAAGGCGGAGGACGAGGAGCACAAGAAGAAGGTGGACGCCAAGAACGCGCTGGAGAAC
TACGCCTACAACATGCGCAACACGGTCAAGGACGAGAAGATCGCCTCCAAGCTCGGGGCG
GACGACAAGAAGAAGGTGGAGGACGCGGTCGAGGGCACCATCAGCTGGCTGGACGGCAAC
CAACTCGCCGAGGCCGAGGAGTTCGAGGACAAGATGAAGGAGCTGGAGGGCATCTGCAAC
CCCATCATCGCCAAGATGTACCAGGGCGCCGCGCCGGACATGGGCGGGGGCATGGGCATG
GACGAGGACATGCCCGCCGGTGGCGGCGGCGCCGGCCCCAAGATAGAGGAGGTTGACTAA
GCTGTTGCTCCATGGTGGCCTTCCTTCGGTCTGCGCGCAACTTGATGGGTGTTCTGTTTC
GGTGTCCTTTGGATGCTGCTCGGTGGTGTCAGTCGTTTGTCGTCGTGTCATGTAGCAGGA
AGTAGTAATAGTGGTTGGATGGAGTTGTTTTGTCTGAGGACATGATGGATCATAATGTTT
GCTTGTTGGTTTGGAACCGTTGAAGTTTAGAGCTTATCGTTTGAAAAAAAAAAAAAAAAA
A

Homology of Contig U35_469 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g38530.1	647	protein\|DnaK family protein, putative, expressed
Brachypodium v1_2	Bradi2g23250.1	650
Arabidopsis v10	AT3G12580.1	650	\| Symbols: HSP70, ATHSP70 \| heat shock protein 70 \| chr3:3991487-3993689 REVERSE LENGTH=650