barSeed - Barley Seed Development Database

Probe CUST_7845_PI390587928

Source Contig U35_30609

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7845_PI390587928	Hv_44K_v2	CGAACGGAATCGAATGGAAATTGGTGTGGATTATGCCTGAATTTTTCAGCGGTCAAAAAA	479	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11898.1	439	3e-21	197 - 250	100	54 / 54	minus	ABC00139 ABC00163 ABC00203 ABC00695 ABC00877 ABC30604 ABC32179 ABC37444
MLOC	MLOC_11897.3	1729	3e-21	1487 - 1540	100	54 / 54	minus	ABC00139 ABC00163 ABC00203 ABC00695 ABC00877 ABC13704 ABC26541 ABC30604 ABC32179 ABC37444
MLOC	MLOC_11897.4	1733	3e-21	1491 - 1544	100	54 / 54	minus	ABC00139 ABC00163 ABC00203 ABC00695 ABC00877 ABC13704 ABC26541 ABC30604 ABC32179 ABC37444
JLOC1	JLOC1_7934.1	380	2e-21	138 - 191	100	54 / 54	minus
Harvest21	ABC30604	550	3e-25	480 - 539	100	60 / 60	plus	ABC30604
Harvest35	U35_30609	550	3e-25	480 - 539	100	60 / 60	plus

Contig Sequence (550 bp)

>U35_30609 550 Hv_44K_v2
GCAAAATCCGTTAGCATGAATGATCTTGAGTATGCCAAGGACCGGATCATGATGGGTAGT
GAGCGCAAGTCAGCAGTTATCTCTGATGAGTGCAGGAAACTGACAGCATACCATGAAGGA
GGGCATGCCCTTGTTGCCATGCACACTGATGGTGCGCACCCTGTCCACAAAGCTACCATC
GTGCCCAGGGGGATGGCCCTTGGGATGGTGGCTCAACTCCCTGACAAAGACGAGACTAGT
GTGTCAAGGAAACAGATGCTAGCAAGATTGGATGTGTGCATGGGAGGACGGGTGGCAGAG
GAGCTTATATCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCACTCAAGCGCCA
GGGGCGCACCCTCTACGGCTTCGGAGGCTAGGCCACCAACCAGATTTAGAGAGTTCTAGG
GTTCGTGGTCGTTGGTGTAATGGCAGCATCTCGCTGTTGTTTGCTGTCTTCTGTAGAATC
GAACGGAATCGAATGGAAATTGGTGTGGATTATGCCTGAATTTTTCAGCGGTCAAAAAAA
AAAAAAAAAA

Homology of Contig U35_30609 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g39260.1	716	3e-58	protein\|OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed
Brachypodium v1_2	Bradi2g41610.1	705	2e-60
Arabidopsis v10	AT2G26140.1	717	2e-54	\| Symbols: ftsh4 \| FTSH protease 4 \| chr2:11131939-11135126 REVERSE LENGTH=717