barSeed - Barley Seed Development Database

Probe CUST_7829_PI390587928

Source Contig U35_42264

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7829_PI390587928	Hv_44K_v2	AATGGATCAAAGCAGGCCAGAACCCAGTGATCAAACCAGTGGTACCGGGTTTAAATAGAA	526	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72559.1	1813	2e-24	401 - 460	100	60 / 60	plus	ABC07811 ABC09965 ABC43005 ABC47240
MLOC	MLOC_72559.2	1837	2e-24	467 - 526	100	60 / 60	plus	ABC07811 ABC09965 ABC43005 ABC47240
JLOC1	JLOC1_48261.3	1580	8e-25	287 - 346	100	60 / 60	plus
JLOC1	JLOC1_48261.2	1850	8e-25	299 - 358	100	60 / 60	plus
JLOC1	JLOC1_48261.1	1866	8e-25	304 - 363	100	60 / 60	plus
Harvest21	ABC37814	680	3e-25	527 - 586	100	60 / 60	plus
Harvest35	U35_42264	680	3e-25	527 - 586	100	60 / 60	plus

Contig Sequence (680 bp)

>U35_42264 680 Hv_44K_v2
CCCGGGCTGCAGGGGTGAGCAGCGGGAGCCTCCGCTCGCCATCGTCCATGACGCGCTGCA
CCGAGCGCCGTTGACCACGCGCCTCCTCCGTGGAGCGAAGGAGGCGAGGCGCTGACACGC
CGATAGGAGTGCATGGCGACGACGGCCACGACAGCTTCGACAGCTTCTCACCCGATGCGT
ATCGGAGGGAGGCGATGACGGCCAACATCAGCATAAGATCCATGTGGACTAATGTACTAC
AAAGGCATCTACCATAATTTTTACCAGTATAACCCCCATTCTGCCCTCTGGTGTTGGGGT
GACATAGTTTGGGGGCATTCAGTTTCGACGGACCTCATCAACTGGATTCATCTTGAACCC
GCGATAGAACCGGATAACCCGAGTGACAGAGATGGTTGTTGGACCGGTTCAGCCACAATT
TTGTCCGGTGGTCAGCCTGTCATCTTATACACTGGTATCAGCAGAAAGAAGTTTCAGGTC
CAAAATCTCGTCTTTCCCAAGAATACTTCTGATCCATACCTGAAAGAATGGATCAAAGCA
GGCCAGAACCCAGTGATCAAACCAGTGGTACCGGGTTTAAATAGAAGCCGGTTCAGGGAT
CCGACGACCGGTTGGATTGGACCAGATGGATTGTGGAGAATAGCAGTTGGGGCTCAGCTG
AAAAGCTACACCGCTGCTCT

Homology of Contig U35_42264 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g73580.1	513	1e-74	protein\|glycosyl hydrolases, putative, expressed
Brachypodium v1_2	Bradi2g61830.1	582	6e-78
Arabidopsis v10	AT1G55120.1	594	7e-56	\| Symbols: ATFRUCT5, AtcwINV3, FRUCT5 \| beta-fructofuranosidase 5 \| chr1:20566617-20569165 FORWARD LENGTH=594