barSeed - Barley Seed Development Database

Probe CUST_7771_PI390587928

Source Contig U35_1220

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7771_PI390587928	Hv_44K_v2	CTACCCTGTTATCTGTATGTATTTGACTACTTGGAGCTTGAAACTAAGAATCATGATAGC	959	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370494	1015	2e-24	934 - 993	100	60 / 60	plus	ABC02392 ABC12058 ABC24791
MLOC	MLOC_74252.1	631	2e-24	41 - 100	100	60 / 60	minus	ABC02392 ABC24791
JLOC1	JLOC1_49474.1	721	8e-25	532 - 591	100	60 / 60	plus
Harvest21	ABC02392	627	3e-25	529 - 588	100	60 / 60	plus	ABC02392
Harvest35	U35_1220	1058	3e-25	960 - 1019	100	60 / 60	plus

Contig Sequence (1058 bp)

>U35_1220 1058 Hv_44K_v2
GCACGGGGTTCTCGCCGCTGCCGCTGTTCACGGACCGGTCGCCCCCGCAGTCGCGGGAGG
AGAAGGACGGCGGCTTCAAGTCGCCCAATGGCACGGGAGGTGACCATGCTGAACCTCGAC
TTCCTCGCCGAGCACGGCCTGCAGTGGTGGATCGTGCGCCTCTCCATGGCGCCCGACACC
GACTAGGTCTACCTCATCACCAAGGTCGTCGCCCGCCGCTTCTCGGAGGTCTCCTTCAAG
GCGATGACGAAAACGATGGTGTCTTGCGCCCAAAGCACGTTCGGTGTGTTCGACAAATCT
GTCGAGGAGGTACGCAACAACAGATATCATATCATACACAAGCTTTGGAAGTAGCTACAA
GTTAGGAATGGAAGTCTTCTATGCCCAGAAAGAGCTCCAGGCAATCGCCATATCCAGTTT
ACTCAATGTGCACATATCATCATGGACAAGCCCGGCGGCGAGGGCGCCTCCAAGCATCAG
ATGATCGACTGCTACATCCAGACCCTCGCCAAGGTCCTCGGAAGCGAGGAAGAGGCCAAG
AAGAAGATTTACAACGTCTCGTGTGAGCGCTACTTTGGGTTCGGGTGTGAGATTGATGAA
GAGACATCCAACAAGCTTGAAGGGATTCCTGGCGTTCTCTTTGTGCTCCCGGATTCCTAT
GTTGACCCTGAGCACAAGGACTATGGAGCCGAGCTGTTTGTGAATGGGGAGATTGTTCAG
AGATCTCCGGAGAGGCAGAGGAGGGTGGAGCCTGTGCCACAGAGAGCGTCGGACAGGCCA
AGGTACAACGACAGGACCCGGTACGCACGGCGGAGGGAGAACCAGCAGCAGCCGCAGCGA
TGATTCATCACACGACCGAGGCCGAGGCCAGAGCTAGAGGCAACCTGCCGTGCTGTTTTC
GTCCCCTCGACACAGCGAGTAGTTGTTATTGCTCGGTTTTAGTAATCTGTTTCATGTTGC
TACCCTGTTATCTGTATGTATTTGACTACTTGGAGCTTGAAACTAAGAATCATGATAGCA
TAAAAGAATTTTAGAGCTGTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_1220 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g02600.1	228	4e-72	protein\|DAG protein, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi3g00440.1	235	1e-72
Arabidopsis v10	AT2G33430.1	219	1e-67	\| Symbols: DAL1, DAL \| differentiation and greening-like 1 \| chr2:14162732-14164729 FORWARD LENGTH=219