barSeed - Barley Seed Development Database

Probe CUST_7749_PI390587928

Source Contig U35_1242

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7749_PI390587928	Hv_44K_v2	TAATCGATCACCTCTGCGAATCTATCTTAGTTCCTCCTGGCAGAACAGAATGTTGCTGTC	1305	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.337	0.355	0.854	1.923	1.424	1.475
Raw	7728.397	12857.807	26973.933	90118.767	24816.833	28005.300

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66606.1	2555	2e-24	134 - 193	100	60 / 60	minus	ABC04148 ABC15143 ABC29917 ABC48483
JLOC1	JLOC1_43911.2	1208	8e-25	1007 - 1066	100	60 / 60	plus
JLOC1	JLOC1_43911.1	1722	8e-25	1521 - 1580	100	60 / 60	plus
Harvest21	ABC04149	1445	3e-25	1277 - 1336	100	60 / 60	plus
Harvest21	ABC04148	1427	3e-25	1264 - 1323	100	60 / 60	plus	ABC04148
Harvest35	U35_1242	1507	3e-25	1306 - 1365	100	60 / 60	plus

Contig Sequence (1507 bp)

>U35_1242 1507 Hv_44K_v2
TCGAGCACTGTTGGCCTGCTGCACACACCCTCCTTCCTGCTCGCCACGGCAACCAGTTCC
CCTTCCAGCCCTTGAGCCAACCAGCCACCCTCTTTGATCGATCGTTCGGCGGCGATGGCG
GTGGATCTGACCCCGAGGCAGCCGGCAAAGGCGTACGGCGGCGAGGGCGGCGCCTACTAC
GAGTGGAGCCCGGCGGAGCTGCCCATGCTCGGCGTCGCCTCCATCGGGGCCGCCAAGCTC
TCGCTCGCCGCCGGCGGCATGTCGCTCCCCAGCTACTCCGACTCCGCCAAGGTCGCCTAC
GTCCTCCAAGGCAAGGGAACCTGCGGCATTGTGCTGCCTGAGGCCACCAAGGAGAAGGTG
GTCGCCGTGAAGGAGGGTGACGCTCTGGCGCTCCCCTTTGGGGTGGTCACCTGGTGGCAC
AACACCCCCGAGTCTGCCACTGAGCTCGTCGTCCTCTTCCTCGGCGACACCTCCAAGGGC
CACAGGCCTGGCCAGTTCACCAACTTCCAGCTCACCGGTGCCAGCGGTATCTTCACCGGC
TTCTCCACCGAGTTTGTCGGCCGTGCCTGGGACCTCAAGGAGGACGACGCTGCCAAGCTC
GTCTCCAGCCAGCCAGCCTCTGGCATTGTTAAGCTCTCTGCCGGGCAGAAGCTGCCGGAG
CCGGTTGATGCTGACCGCAAGGACATGGCCCTCAACTGCCTTGAGGCCAAGCTTGACGTG
GACATCCCCAACGGTGGCCGCGTGGTGGTGCTCAACACGGTGAACCTGCCCCTGGTGAAG
GAGGTTGGGCTCGGTGCTGACCTTGTCAGGATCGACGCCCACTCCATGTGCTCCCCGGGC
TTCTCCTGTGACTCAGCGTACCAGGTGACCTATATCGTCCGTGGCAGCGGCCGCGTTCAG
GTCGTTGGCCCTGACGGCAAGCGTGTGCTGGAGACCCGCATTGAGGGCGGCAGCCTCTTC
ATCGTGCCCCGCTTCCACGTCGTGTCCAAGATCGCTGATGCCTCCGGCATGGAGTGGTTC
TCTATCATCACCACCCCCAACCCGATCTTCAGCCACCTTGCTGGGAAGACCTCGGTGTGG
AAGGCCATCTCGCCGGAGGTGCTGGAGGCGTCGTTCAACACCACGCCGGAGATGGAGAAG
CTCTTCCGGTCCAAGAGGCTGGACTCCGAGATTTTCTTCGCCCCCAACTAGGAGCCATTC
GTCGCGCATCGGCCGGTCGCCTTAGGCAGGAATAAATAAATTTTAGTTAGGAGATTGAAA
CTCTATGGGCGTGATTGAGTCTGTTGGTTGAGCTGCTGGTGGTTTTAATCGATCACCTCT
GCGAATCTATCTTAGTTCCTCCTGGCAGAACAGAATGTTGCTGTCGGGTCGTCGTCGGTT
AAATCGAGTGTGAGTGTTTGTTGCCGGCCGATCTGGGCTCAGAACTGATGAATGCAATCG
ACCGTTAAATTCTGGTGAAAAAAAAAAAAAAAAATGTTTGCCTGTGTTGCTAAAAAAAAA
AAAAAAA

Homology of Contig U35_1242 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g02520.1	360	0.0	protein\|cupin domain containing protein, expressed
Brachypodium v1_2	Bradi2g37470.1	359	0.0
Arabidopsis v10	AT1G07750.1	356	1e-160	RmlC-like cupins superfamily protein \| chr1:2404300-2405863 REVERSE LENGTH=356