barSeed - Barley Seed Development Database

Probe CUST_7701_PI390587928

Source Contig U35_1445

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7701_PI390587928	Hv_44K_v2	GTGGGTTGTTTGGTGTGACAAATCAATTCGATTTCCGATCCATTGATCTGTTATGGGTAA	487	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356464	1524	3e-21	1307 - 1360	100	54 / 54	plus	ABC04561 ABC22323 ABC46818
Harvest21	ABC22323	664	6e-22	556 - 609	100	54 / 54	plus	ABC22323
Harvest35	U35_1445	594	3e-25	488 - 547	100	60 / 60	plus

Contig Sequence (594 bp)

>U35_1445 594 Hv_44K_v2
GGCATTGTTGAGGGTGGAAGGGGATATAGCTTCAGGACATTGGAGGATGTGATATCCAAA
AACAAGAAATTCGCGAGGCAGTTGAGTTACCATTGACACATCATGAATTGTACAAGCAGA
TTGGTATTGATCCTCCAAGAGGGGTGCTGCTCTATGGTCCTGCAGGCACTGGCAAGACCA
TGCTTGCTAAAGCTGTGGCACATCACACTACTGCTGCTTTTATCAGAGTGGTTGGTTCAG
AGTTTGTGCAGAAGTACCTGGATGAGGTAAGTTGTGGATTATGTTTACAGTGCATCGTCA
TCTATCCTGCAGGTTTCAGTTTCCAGAAGCGCCCGGCAGCCGCAGCGACCTCCACCATGG
ACGGCGCCTGAAACGTATGCCCGATCATGATATTTGGTCTAGGGCCTTCTGTGTTTCTTT
GAATAGCCTGTATCGTTAGTTTCAGTTCTTGCTTTCGATCTTTTGGTCGGTGCTGGAACT
TGGATTTGTGGGTTGTTTGGTGTGACAAATCAATTCGATTTCCGATCCATTGATCTGTTA
TGGGTAATGAGCGGCCGCTCGAGCATCTATCGTAAGGGCCCAATTCGCCCTATA

Homology of Contig U35_1445 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None