barSeed - Barley Seed Development Database

Probe CUST_7700_PI390587928

Source Contig U35_1446

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7700_PI390587928	Hv_44K_v2	GGAGAACCGAGTACCACCTTTCCGTTCTTAAAATATAAAGTGCATTAATCCTTTTGAATT	1579	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.547	1.708	1.257	0.831	0.365	0.309
Raw	5065.117	8528.223	5611.787	5622.190	894.170	826.032

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC04561	1714	1e-23	1580 - 1639	98	59 / 60	plus	ABC04561
Harvest35	U35_1446	1722	3e-25	1580 - 1639	100	60 / 60	plus

Contig Sequence (1722 bp)

>U35_1446 1722 Hv_44K_v2
TTCCCTTCTTCCAAGCAAACCGCTCTTCGCGTCTCAGGTTCCTCTGCACACCGCTCCGCT
CCTCTCGACAGATCGGAGCCGCAGACGCGCCCCCCGCCACCAAACCCTAGCCCCCCGCGA
TGTCGGCCGCGGCCGTCGCGCCGAGCCCGCCGGCGGCCCCGCCGTCCTACCCCGCGGCGC
CCTCCGCCCCCTCCGCTGAGGATGACGACGACCTCTACGGCCGCCTCAAGTCGCTGCAGC
GCCACATGGAGTTCGTCGAGATCCAGGAGGAGTACGTCAAGGACGAGCAGAAGAACCTTA
AGCGCGAGCTGCTGCGCGCGCAGGAGGAGGTCAAGCGGATCCAGTCGGTGCCGCTCGTCA
TCGGCCAGTTCATGGAGATGGTCGACGGCAACAACGGCATCGTCGGCTCCACCACCGGCA
GCAACTACTACGTGCGCATCCTCAGCACCATCAACCGCGAGCTGCTCAAGCCCTCCGCCT
CCGTCGCCCTGCACCGCCACTCCAACGCCCTCGTCGACGTGCTGCCCCCCGAGGCCGACT
CCAGCATCTCGCTCCTCGCCTCCTCCGAGAAACCCAACGTCCTCTACTCGGACATTGGAG
GATGTGATATCCAAAAACAAGAAATTCGCGAGGCAGTTGAGTTACCATTGACACATCATG
AATTGTACAAGCAGATTGGTATTGATCCTCCAAGAGGGGTGCTGCTCTATGGTCCTCCAG
GCACTGGCAAGACCATGCTTGCTAAAGCTGTGGCACATCACACTACTGCTGCTTTTATCA
GAGTGGTTGGTTCAGAGTTTGTGCAGAAGTACCTGGGTGAGGGCCCAAGGATGGTTCGAG
ATGTATTCCGCTTAGCTAAAGAGAATGCCCCGGCTATAATATTCATTGATGAGGTTGATG
CTATAGCCACTGCTCGATTCGATGCTCAGACCGGGGCTGACCGAGAAGTTCAGCGTATTC
TGATGGAACTACTGAATCAGATGGATGGATTTGATCAGACAGTGAATGTGAAGGTTATAA
TGGCAACCAATCGGGCAGATACTCTAGATCCTGCTCTGCTGCGTCCAGGAAGACTGGACA
GGAAAATTGAGTTCCCTCTGCCGGATCGGAGGCAGAAGAGGCTTGTTTTCCAAGTTTGTA
CTGCTAAGATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATGTCTCCAGACCTGATA
AAATCAGTGCTGCTGATATCACTGCTATTTGCCAGGAAGCTGGCATGCATGCTGTCCGCA
AAAATCGGTATGTTATCCTCCCCAAGGACTTCGAGAAGGGTTACCGAACCAACGTCAAGA
AGCCTGAGTCAGACTTTGACTTCTACAAATGAGGCAACAAACTGTTAAGAGGATGCTTTA
TTTTCTACTGGCGACATGATTAACACTATCGATGAATTTGTGGATAGTCGCCTGATAAAA
TATCCTTGTATCTCGGTGCTCATGTAGTTTGCACGTTCAGTCTCACCATCCTTGTTAAGC
TACTTGTCTGTACAATTCCTTCTTCCTAAAGTTTCTCTTGACTAAAAAAAAAAAAAAAAA
GCTGTGATTGTCTTCCAAAGGAGAACCGAGTACCACCTTTCCGTTCTTAAAATATAAAGT
GCATTAATCCTTTTGAATTTTAAACTTCCTCACATTTGACAAACTTTATATTAAATATTA
ACATTTAATATACAAAGTTATTATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1446 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g21970.1	420	protein\|26S protease regulatory subunit 6B, putative, expressed
Brachypodium v1_2	Bradi3g10720.1	420
Arabidopsis v10	AT5G58290.1	408	\| Symbols: RPT3 \| regulatory particle triple-A ATPase 3 \| chr5:23569155-23571116 FORWARD LENGTH=408