barSeed - Barley Seed Development Database

Probe CUST_7682_PI390587928

Source Contig U35_1464

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7682_PI390587928	Hv_44K_v2	ATTCAAGGAGCACAATTTATCATGTGCTGCTGGTAATATATAAAGCGTGTTCTGAACCTT	1280	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369940	1548	2e-24	1489 - 1548	100	60 / 60	plus	ABC04118 ABC04119
JLOC1	JLOC1_40914.4	2111	8e-25	1921 - 1980	100	60 / 60	plus
JLOC1	JLOC1_40914.3	1515	8e-25	1325 - 1384	100	60 / 60	plus
JLOC1	JLOC1_40914.2	1508	8e-25	1318 - 1377	100	60 / 60	plus
JLOC1	JLOC1_40914.1	1513	8e-25	1323 - 1382	100	60 / 60	plus
Harvest21	ABC04119	1363	3e-25	1281 - 1340	100	60 / 60	plus	ABC04119
Harvest35	U35_1464	1363	3e-25	1281 - 1340	100	60 / 60	plus

Contig Sequence (1363 bp)

>U35_1464 1363 Hv_44K_v2
CCTCCGCCCCCTTCCACTCGCTCTCCGCCAGGGGCTCACAAGGGAAGGCGCGGGACGCGA
GCTGGTGGTGGGGAATGGCCGGCGCGTCCTCGCCGCCCCCGACGCCCAAGTCGCCCAAGC
TGCAGCCGCCCCTCCTCGAGCGCACCAAGGGCCCCTCCGGCCTCGACAAGATCGTGCTCC
GCGACCCGGGCCGCTTCACCGCCGAGGTCCGTCTATATGGAGGGCAAGTTACCTCTTGGA
AGAATGAACAGGGGGATGAGTTACTTTTTGTAAGCAGCAAGGCAGTTTTTAAGTCTCCAG
GAGCAATTCGTGGTGGCATACCCATTTGCTTTCCCCAGTTTGGAACACATGGAAATCTTG
AAAAACATGGATTTGCGAGGAACCGGCTATGGCTCGTTGATGATAATCCTCCACCACTCC
CAGTAAACAGCGGTATTAAAACTTATGCAGATCTCATTCTGAAGCCTTCTGAAGAAGATC
TCAAGATCTGGCCTCACAGATTTGAATTCCGATTCACGGAGCAGGGGGATGCTCTTGTGT
TTGAATCAGAGATTGACAAAATATATCTGGACACACCACCAAAAATTGCAATTATTGATC
ATGAGAAGAAAAGAACATTTGTGCTTAGGAAAGATGGGCTTCCAGATGCTGTTGTATGGA
ACCCATGGGAGAGGAGGTCAAAAACCATTCTGGATTTTGGTGATGAAGAATATAAGCACA
TGTTGTGTGTGGAGCCTGCAGCTGTTGAGAAGCCCATTACCTTGAAGCCTGGTGAAGAGT
GGAAAGGAAGGTTGGAGCTCTCAGCTGTTCCTTCCAGTTACTATAGTGGTCAGTTAGATC
CAGACAAGGTTCTTCATGGTTGAAAATCCTCACTTGGTGCATCTCGTACAGGAACACTTC
AGGGCACTTTATATTACCTGGTGCTCTGTCTGTCCGGTGTTGATGCTATGTGAACTTGCT
GGCTTTCATCTCCTCCATCGTCTCCGCCTACATATGTTTATTTCTTCATGTATAGAAGGA
GGAGGCGAGCACCGGAATAACAAAACAGCCTGAGTGTCTCTATCTCGAAATCTGTCTTCG
ATGCACTCAGCTCAGTGTTCAGTCGCAGCAAAAAAAGAAGCGAATAATAGCATTCCGATA
GTTTAGGGTTGCCTCCTGGCCCTGGACAATGGGTGATTTGTTGTACTTCTGCATCGGAGT
ACCAATTGTTATCAGACTATTGTCTGTACTCCTCTAAGATCTGTACATATACTATCTTAG
GAACTTGCTGGTGTGAGATAATTCAAGGAGCACAATTTATCATGTGCTGCTGGTAATATA
TAAAGCGTGTTCTGAACCTTAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_1464 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g51390.1	326	1e-64	protein\|aldose 1-epimerase, putative, expressed
Brachypodium v1_2	Bradi5g20770.1	329	1e-92
Arabidopsis v10	AT5G57330.1	312	3e-62	Galactose mutarotase-like superfamily protein \| chr5:23218392-23220664 FORWARD LENGTH=312