barSeed - Barley Seed Development Database

Probe CUST_7681_PI390587928

Source Contig U35_1465

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7681_PI390587928	Hv_44K_v2	TATTGAAGGGCTGGAGACAATGGACTACTTTGACAACCTGAAGGGAAAAGAGCGATTCAC	655	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369940	1548	2e-24	666 - 725	100	60 / 60	plus	ABC04118 ABC04119
MLOC	MLOC_62518.5	3678	2e-24	2064 - 2123	100	60 / 60	plus	ABC04119 ABC21725
MLOC	MLOC_62518.3	981	2e-24	455 - 514	100	60 / 60	plus	ABC04118 ABC04119 ABC21725
MLOC	MLOC_62518.2	1546	2e-24	1020 - 1079	100	60 / 60	plus	ABC04118 ABC04119 ABC21725
MLOC	MLOC_62518.4	1279	2e-24	449 - 508	100	60 / 60	plus	ABC04118 ABC04119 ABC21725
MLOC	MLOC_62518.1	1564	2e-24	899 - 958	100	60 / 60	plus	ABC04118 ABC04119 ABC21725
JLOC1	JLOC1_40914.4	2111	8e-25	444 - 503	100	60 / 60	plus
JLOC1	JLOC1_40914.3	1515	8e-25	502 - 561	100	60 / 60	plus
JLOC1	JLOC1_40914.2	1508	8e-25	495 - 554	100	60 / 60	plus
JLOC1	JLOC1_40914.1	1513	8e-25	500 - 559	100	60 / 60	plus
Harvest21	ABC04120	999	3e-25	656 - 715	100	60 / 60	plus
Harvest21	ABC04116	618	3e-25	107 - 166	100	60 / 60	plus
Harvest35	U35_1465	1167	3e-25	656 - 715	100	60 / 60	plus

Contig Sequence (1167 bp)

>U35_1465 1167 Hv_44K_v2
GATCTCCCTCCGCCCCCTTCCACTCGCTCTCCGCCAGGGGCTCACAAGGGAAGGCGCGGG
ACGCGAGCTGGTGGTGGGGAATGGCCGGCGCGTCCTCGCCGCCCCCGACGCCCAAGTCGC
CCAAGCTGCAGCCGCCCCTCCTCGAGCGCACCAAGGGCCCCTCCGGCCTCGACAAGATCG
TGCTCCGCGACCCGGGCCGCTTCACCGCCGAGGTCCGTCTATATGGAGGGCAAGTTACCT
CTTGGAAGAATGAACAGGGGGATGAGTTACTTTTTGTAAGCAGCAAGGCAGTTTTTAAGT
CTCCAGGAGCAATTCGTGGTGGCATACCCATTTGCTTTCCCCAGTTTGGAACACATGGAA
ATCTTGAAAAACATGGATTTGCGAGGAACCGGCTATGGCTCGTTGATGATAATCCTCCAC
CACTCCCAGTAAACAGCGGTATTAAAACTTATGCAGATCTCATTCTGAAGCCTTCTGAAG
AAGATCTCAAGATCTGGCCTCACAGATTTGAATTCCGATTAAGAGTCGCTCTTGGACCCA
AAGGAGAATTGTTTCTCACTTCTCGAATTAGAAACACCAACACTGATGGAAAACCCTTCT
CATTTACATTTGCATATCATACATACTTCTCCGTGTCTGACATAAGCGAAGTACGTATTG
AAGGGCTGGAGACAATGGACTACTTTGACAACCTGAAGGGAAAAGAGCGATTCACGGAGC
AGGGGGATGCTCTTGTGTTTGAATCAGAGATTGACAAAATATATCTGGACACACCACCAA
AAATTGCAATTATTGATCATGAGAAGAAAAGAACATTTGTGCTTAGGAAAGATGGGCTTC
CAGATGCTGTTGTATGGAACCCATGGGAGAGGAGGTCAAAAACCATTCTGGATTTTGGTG
ATGAAGAATATAAGCACATGTTGTGTGTGGAGCCTGCAGCTGTTGAGAAGCCCATTACCT
TGAAGCCTGGTGAAGAGTGGAAAGGAAGGTTGGAGCTCTCAGCTGTTCCTTCCAGTTACT
ATAGTGGTCAGTTAGATCCAGACAAGGTTCTTCATGGTTGAAAATCCTCACTTGGTGCAT
CTCGTACAGGAACACTTCAGGGCACTTTATATTACCTGGTGCTCTGTCTGTCCGGTGTNG
ATGCTATGTGAACTTGCTGGCTNTCAT

Homology of Contig U35_1465 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g51390.1	326	0.0	protein\|aldose 1-epimerase, putative, expressed
Brachypodium v1_2	Bradi5g20770.1	329	0.0
Arabidopsis v10	AT5G57330.1	312	8e-172	Galactose mutarotase-like superfamily protein \| chr5:23218392-23220664 FORWARD LENGTH=312