barSeed - Barley Seed Development Database

Probe CUST_767_PI390587928

Source Contig U35_19446

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_767_PI390587928	Hv_44K_v2	CCTTGTACAAAGCGGTTAGCGGGTCTCGTCTCTCCAATTGAATCCAAGTGATTTGTTTCT	1042	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.046	1.986	2.021	0.895	0.211	0.173
Raw	950.254	2927.256	2560.063	1799.949	152.041	134.522

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60733.3	2858	2e-24	2796 - 2855	100	60 / 60	plus	ABC10767
MLOC	MLOC_60733.1	3638	2e-24	3570 - 3629	100	60 / 60	plus	ABC10767
MLOC	MLOC_60733.2	3370	2e-24	3301 - 3360	100	60 / 60	plus	ABC10767
JLOC1	JLOC1_39630.1	3360	8e-25	3297 - 3356	100	60 / 60	plus
Harvest21	ABC10767	1123	3e-25	22 - 81	100	60 / 60	minus	ABC10767
Harvest35	U35_19446	1123	3e-25	1043 - 1102	100	60 / 60	plus

Contig Sequence (1123 bp)

>U35_19446 1123 Hv_44K_v2
ATGGCCGTAAGCGGCTGTCCGCCATCGGGCGCTCCGGCTCAGCTCACGACGACTACGGCT
TCTCCGCCGAGATACAGACGCTGGGGCGGATCCGGCACCGCCACATCGTGCGGCTGCTCG
GGTTCGCGGCCAACCGCGAGACCAACCTCCTGGTGTACGAGTACATGCCCAACGGCAGCC
TCGGCGAGGTGCTCCACGGCAAGAAGGGCGGCCACCTGCAGTGGGCGACGCGGTACAAGA
TCGCCGTCGAGGCGGCCAAGGGCCTCTGCTACCTGCACCACGACTGCTCGCCGCCGATAC
TGCACCGCGATGTCAAGTCCAACAACATCCTCCTCGATACCGACTTCGAGGCGCACGTCG
CCGACTTCGGCCTCGCCAAGTTCCTCAACGGCAATGCCGGCGGCTCCGAGTGCATGTCCG
CGATCGCCGGTTCCTATGGGTACATCGCTCCTGAGTACGCCTACACTCTCAAGGTGGACG
AAAAGAGCGACGTGTACAGCTTCGGCGTGGTGCTGCTGGAGCTCGTCACCGGACGCAAGC
CGGTGGGCGAGTTCGGGGACGGCGTAGACATCGTGCAGTGGGTGCGGATGGCCACCGGGT
CGACCAAGGAAGGTGTGATGAAGATCGCCGACCCCCGCCTCTCGACGGTGCCCATCCAGG
AGCTGACGCACGTCTTCTACGTCGCCATGTTGTGTGTCGCCGAGCAGAGCGTCGAGCGGC
CTACAATGCGGGAGGTCGTGCAGATCCTAGCCGACATGCCGGGGGCGACGTCGATGACCG
TCGGTACGCGATCCGAAGCCACCGTTGAAGTTGAGGAGGAGCATCAGGACGGGACACAGG
ACTCCCCGGCGCAGCAGGATCTCCTCAGCATTTAGTGGCTGTACCTTGTCGCAGCCCCTG
TACCTTGTGGTGTACTCTTCGGAATGTGGTGGCGTGTCCGGATGCGTGTGAAGGCATGTG
CTAGATTAGTGGTATGATAATGTTGTTGATTAATTAGACCAGTGTAATCTCTGTAGTAGT
AGCAGCAGCAGCAGTAGTGCTGCCTTGTACAAAGCGGTTAGCGGGTCTCGTCTCTCCAAT
TGAATCCAAGTGATTTGTTTCTAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_19446 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g12730.1	1008	2e-171	protein\|receptor protein kinase CLAVATA1 precursor, putative, expressed
Brachypodium v1_2	Bradi1g69097.1	1003	6e-167
Arabidopsis v10	AT5G65700.1	1003	4e-141	\| Symbols: BAM1 \| Leucine-rich receptor-like protein kinase family protein \| chr5:26281826-26284945 FORWARD LENGTH=1003