barSeed - Barley Seed Development Database

Probe CUST_7613_PI390587928

Source Contig U35_232

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7613_PI390587928	Hv_44K_v2	TCTTCTGGCTTCAGCTATAAAGAGCCATTGCAAGTTTTGTCAACTCTGACATTGCTTTGG	1213	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.942	4.333	1.423	0.777	0.249	0.495
Raw	1166.006	2140.733	571.082	541.405	53.404	123.073

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC00642	1252	3e-25	1190 - 1249	100	60 / 60	plus	ABC00642
Harvest35	U35_232	1276	3e-25	1214 - 1273	100	60 / 60	plus

Contig Sequence (1276 bp)

>U35_232 1276 Hv_44K_v2
CCCCCTCTCGCCATGGCCGGCCGCCTCCTCGCCGCCCCTCTCCTCCTCCTCGTGCTCCTC
CAGCTCCCGGCGCCGTTGCAGGTGTCCGCGTACCCGCTCACGGCGGTACACTCTGGTCGG
TGCCCGAGGCCGGAGGAGAGGCCGCCGCCGTTCCTCCAGGGGCTCCGGGGAACCTGCCGC
ACCTCGACGGAGGGACAGCTGGCCAAGGAGGTTAATGGGGAGGAACTTATCAGAGAATTG
GGTGGAAAGGAGTACACTGCTGTCCTCTTCTATGCATCATGGTGCCCTTTCTCTCATAGA
ATGAGACCAATCTTCGACGATCTTAGCTCAATGTATCCACATATTAAGCACTTGGCTGTA
GAACAGTCCAACGTGATGCCAACAGTTTTATCAAGATATGGTGTCCGCAGCCTTCCTTCT
ATACTAATAGCTCATGAGTCATATGCGTTCTGGCCTCTTGTTGCTAAAGATCTCAACTCA
CTGGTCAACTTTTACTCTGCTGTTACTGGACAAGAACCAGTTGCATATCTTGGTCCGCGG
AAGTGGAACACAACCGGAAGAAGCACACAGTATGCGAAGCTTTGGAATGGTTCAGTCAGC
GAATCAGTGAAGAGCGAGCCCTACCTAGCATTCAGCATCCTCTTTATTTGCCTAAGGATA
TTTTTGTTCTTCTTCCCAAAGTTCTTCGCCTGCATCAAAGGCTTGTGGACCCAATACTTT
CGGCACGCCAACTTTGGAGTGCTTGCCAAATTGACCCAGCTGCTCGAATGTGTGCCCCAT
GCCGTGGATGTAAGGAAGTTGTGGAGCAAATGGAGGCTCATGGTTGGAGCCATAAACACG
AGAGTCTGGGCATCATCTCTAGCTTCTGTGTCTCTTGGTGGGCAATCTTCTCCCCGAGCT
GCTAGGTTGGATTGATGGTTTGGACTTTAACATTGAGCGGGAGAGCATGCGGGCTGTTTG
AATTGCGCTGGATGTGGAAGCTCCTGTGACTCACATGAAAATGTAGTGAAACATCTTGTT
TGTAGCATGTAAATCTTAGGGATACTGCTGAGCCTGTGTAGATCACACTGTAACATTAAT
CATGAGTACCCATTGTCATAGTTTTGAGCAACTGGGCACACAGCATAAGCCTTGTACTAT
TTTTCACATGTAATCTGCAATTGCAGTATGACATTTCGACCTATGTTTCCATATAAAAAA
AAAAAAAAATCTGTCTTCTGGCTTCAGCTATAAAGAGCCATTGCAAGTTTTGTCAACTCT
GACATTGCTTTGGGTT

Homology of Contig U35_232 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g35640.1	301	7e-114	protein\|OsAPRL6 adenosine 5-phosphosulfate reductase-like OsAPRL6, expressed
Brachypodium v1_2	Bradi4g05510.1	306	7e-139
Arabidopsis v10	None