barSeed - Barley Seed Development Database

Probe CUST_7612_PI390587928

Source Contig U35_233

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7612_PI390587928	Hv_44K_v2	TTTAACTACTACAAAGTTCAGTACGGGACACTCTGCATACGTGAGAATCCTGGGTGCCTT	727	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59521.3	778	2e-24	477 - 536	100	60 / 60	minus	ABC00588 ABC00951
MLOC	MLOC_59521.1	1437	2e-24	526 - 585	100	60 / 60	minus	ABC00588 ABC00951
MLOC	MLOC_59521.2	1509	2e-24	479 - 538	100	60 / 60	minus	ABC00588 ABC00951
JLOC1	JLOC1_38738.2	1658	8e-25	936 - 995	100	60 / 60	plus
Harvest21	ABC00588	1339	3e-25	726 - 785	100	60 / 60	plus	ABC00588
Harvest35	U35_233	1362	3e-25	728 - 787	100	60 / 60	plus

Contig Sequence (1362 bp)

>U35_233 1362 Hv_44K_v2
CGCCCAAACCGAGACCACACCAACCAAACGCCACCCGATCCTCTTCAAAGAAAAACGTAC
TAGCATCGAAGCAGCGATGCTCCTGGCTCGCGCCTCCCCCAGCTTCCTCGCCTCCACCTC
CTCCACCCCTACCCCGTCGTCACAGACGCTGCCGCCGTCCGCGTCCTTCGGGAGGAGCCA
GCGCACGGGCGGCGTCCTAGCCACGGCATCGCCGAACAGCGCCCCCAGACGGCCCGTGAT
GGCGGCTGCGGCGGCAGTCCCGGCGGCAAAGCTGGAGGACGCCGAGGCGCTCATCGACTC
CGTCGAGACGTTCATATTCGACTGCGATGGGGTGATCTGGAAGGGCGACAAGCTGATCGA
CGGCGTGCCGGAGACGCTCGACCTGCTCAGATCAAAGGGCAAGAGGCTGGTGTTCGTGAC
CAACAATTCCACCAAGTCGAGGAAGCAGTACGGGAAGAAATTCGAGACGCTCGGGCTCAG
TGTCAACGAGGAAGAGATATTTGCTTCGTCCTTCGCAGCTGCCGCATACCTGGAGTCTAT
CGATTTCCCCAAAGACAAGAAGGTTTACGTGATTGGAGAGGAAGGGATCCTCAAGGAGCT
CGAGCTGGCTGGCTTTCAGTACCTCGGCGGACCCACAGACGGTGACAAGAAGATAGAGCT
GAAGCCTGGCTTCTACATGGAGCATGACAAAGATGTTGGAGCAGTTGTAGTGGGATTTGA
TCGCTATTTTAACTACTACAAAGTTCAGTACGGGACACTCTGCATACGTGAGAATCCTGG
GTGCCTTTTCATTGCAACAAACAGGGACGCTGTCACCCATCTCACTGATGCCCAGGAGTG
GGCAGGTGGCGGGTCGATGGTCGGCGCTGTTCTTGGTTCAACCAAACAAGAACCGCTCGT
CGTCGGGAAGCCGTCGACATTCATGATGGACTACCTGGCAAAGAAGTTTGGAATCACAAC
ATCTCAGATATGCATGGTAGGTGACCGTTTGGATACTGACGTTCTATTTGGGCAAAATGG
AGGCTGCAAAACTCTCCTGGTTCTTTCAGGTGTGACTTCTGTGCAGATGCTTCAGAGCCC
CGACAACACGATCCAGCCAGATTTCTACACAAACCAAATTTCTGATTTTCTCACCCTTAA
AACAGCAGCAGTATGAACAGAAATGTGAATGTACTGCTTTAGCTGGGGGAGGGCCGTTAC
TTTTGTATAGCAACTAAGAGATCACCCGGGATGGTTTTCTTTCACATTGATTTGTAATCG
CGAGACAGATGTTTAAATGCAAGTATGTACATCATTAAATGCATATCAAAAAAAAAAATG
CTGCTACTCAAAAAAAAAAAAAAAAGCCCAATTCGCCCTATA

Homology of Contig U35_233 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g41340.1	366	0.0	protein\|4-nitrophenylphosphatase, putative, expressed
Brachypodium v1_2	Bradi5g14210.1	360	0.0
Arabidopsis v10	AT5G36700.1	362	3e-171	\| Symbols: ATPGLP1, PGLP1 \| 2-phosphoglycolate phosphatase 1 \| chr5:14421929-14424430 REVERSE LENGTH=362