barSeed - Barley Seed Development Database

Probe CUST_7476_PI390587928

Source Contig U35_47948

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7476_PI390587928	Hv_44K_v2	TGGAGTCTCTCCAGAGGATGTGGTTTAATTTTTGGTAGCATGAACCAAGTTGTGAGAGAT	16	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57334.1	2166	7e-23	130 - 189	98	59 / 60	minus	ABC00807 ABC07090 ABC38468 ABC40556
JLOC1	JLOC1_37142.1	2469	4e-23	2026 - 2085	98	59 / 60	plus
Harvest21	ABC49554	482	3e-25	17 - 76	100	60 / 60	minus
Harvest21	ABC00878	2285	1e-23	1923 - 1982	98	59 / 60	plus
Harvest21	ABC00807	976	1e-23	302 - 361	98	59 / 60	minus	ABC00807
Harvest35	U35_47948	482	3e-25	17 - 76	100	60 / 60	minus
Harvest35	U35_360	2283	1e-23	1923 - 1982	98	59 / 60	plus

Contig Sequence (482 bp)

>U35_47948 482 Hv_44K_v2
ATCATCATCATCATCAATCTCTCACAACTTGGTTCATGCTACCAAAAATTAAACCACATC
CTCTGGAGAGACTCCACCGTCGCTCATCAGTATCCGAAGCCGGAGTTGTCCATGGGGTTG
ACGAGGGGCGCGGGCTCAGGCTCCTTGATCTCGACGACCACCACGTCCGACGTCAGGAAG
GTCTTGGCCACCGACGCGGCATGCTCCAGGCAACATCTCACCACCTTAGTGGGGTCGATG
ATACCAGCAGCCATCAAGTCCTCGTACTGCCCAGTGGCTGCGTTTCAAGCTCGTCGGCGG
CCACTACGACTTCGTCTCCGGCAAGTTCGAAACATGGGAGCAGTAAATCTTCCCCACCGG
TTAACTCCGACATATACAAACGTACATATATCAAGATATCGTCCGATCGATGTGAATGCA
ATGCCATGGGAGTGCGTACCCGTTATTGTCCAGTACTGGATGCCGGATGGCCCGATGTGA
AT

Homology of Contig U35_47948 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None