barSeed - Barley Seed Development Database

Probe CUST_7396_PI390587928

Source Contig U35_32005

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7396_PI390587928	Hv_44K_v2	TCACCCTCAACGCCTACCTGGGCAACAACCGGCCGATGCTGGTGACCAACACGCTCTTTC	279	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.250	0.892	0.934	0.569	1.265	1.342
Raw	11.168	5.828	6.481	4.563	3.419	4.677

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64948.1	2031	2e-24	952 - 1011	100	60 / 60	plus	ABC06409 ABC15518 ABC18569
MLOC	MLOC_64948.3	1557	2e-24	574 - 633	100	60 / 60	plus	ABC06409 ABC15518 ABC18569
MLOC	MLOC_64948.2	1457	2e-24	515 - 574	100	60 / 60	plus	ABC06409 ABC15518 ABC18569
JLOC1	JLOC1_42691.1	2609	8e-25	1319 - 1378	100	60 / 60	plus
Harvest35	U35_32005	463	3e-25	280 - 339	100	60 / 60	plus

Contig Sequence (463 bp)

>U35_32005 463 Hv_44K_v2
AGTCCGAGGCCGTCGTCTTCGGCGTCGTCGACGAGCTGCTGGCCAAGACCGGCGTGCGCG
CGCAGGACATCGGCGTCGTCATCGCCAACTCCAGCCTCTACAGCCCAACGCCGTCCTTCG
TGTCGCTCATCGTGAACCGGTACCGCCTCCGCCACGACATCGTCAGCCACAACCTCAGCG
GCATGGGCTGCAGCGCCGGCATCATCGCCATCGACCTCGCCAAGCACCTCCTTCAGGTGC
ACCCGGACACGTATGCGCTGGTGGTGAGCACGGAGAACATCACCCTCAACGCCTACCTGG
GCAACAACCGGCCGATGCTGGTGACCAACACGCTCTTTCGCGTGGGCGGCGCGGCGGTGC
TGCTCTCGAACCGCCGCCGGGAGCGGGCGCGCGCCAAGTACCAGCTCATCCACACCGTGC
GCACGCACCNGGGCGCCAGCGACCGGAGCTACGGCTGCGTGAC

Homology of Contig U35_32005 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g28060.1	524	8e-77	protein\|3-ketoacyl-CoA synthase, putative, expressed
Brachypodium v1_2	Bradi1g74257.1	529	3e-84
Arabidopsis v10	AT5G43760.1	529	2e-66	\| Symbols: KCS20 \| 3-ketoacyl-CoA synthase 20 \| chr5:17585903-17588486 FORWARD LENGTH=529