barSeed - Barley Seed Development Database

Probe CUST_7309_PI390587928

Source Contig U35_14667

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7309_PI390587928	Hv_44K_v2	AATACTTGTTGGAGAGAACCAGTCGTTGGAGAGAACTAGTCTATCTCCCCCAACATGTAC	1274	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19772.1	1306	2e-24	33 - 92	100	60 / 60	minus	ABC01812 ABC01813 ABC11318
MLOC	MLOC_19772.2	1551	2e-24	33 - 92	100	60 / 60	minus	ABC01812 ABC01813 ABC11318 ABC34623
JLOC1	JLOC1_13697.2	1669	8e-25	1472 - 1531	100	60 / 60	plus
JLOC1	JLOC1_13697.1	1266	8e-25	1069 - 1128	100	60 / 60	plus
Harvest21	ABC01812	1502	3e-25	1266 - 1325	100	60 / 60	plus	ABC01812
Harvest35	U35_14667	1511	3e-25	1275 - 1334	100	60 / 60	plus

Contig Sequence (1511 bp)

>U35_14667 1511 Hv_44K_v2
CGGGGAACTCCGATTCGAAATACTCCTCCTCCTCCCCCCCAGCTAGGGTTTTGCTGCCTC
CCTCCCGTGCCGCCGCCTCTCAACCGCGGCCCCCCCATGGCGCTGCCGAACCAGAACACC
GTCGATTACCCCAGCTTCAAGCTCGTCATCGTCGGCGACGGAGGGACTGGCAAAACCACT
TTTGTGAAGAGGCATCTCACTGGAGAGTTTGAGAAGAAATATGAACCCACCATTGGTGTT
GAAGTTCACCCATTGGATTTCACCACTAACTGTGGAAAGATCCGATTCTACTGCTGGGAC
ACTGCTGGGCAAGAGAAGTTTGGTGGACTTAGGGATGGATACTATATCCATGGTCAGTGT
GCGATAATCATGTTTGATGTCACTTCAAGGCTGACCTACAAGAATGTTCCTACATGGCAC
AGGGACTTGTGCAGGGTGTGTGAGAACATTCCCATTGTCCTGTGCGGGAACAAGGTTGAT
GTGAAGAACAGGCAGGTTAAGGCCAAGCAGGTGACATTCCACAGGAAGAAGAACCTGCAG
TATTATGAGATCTCTGCCAAGAGCAACTACAACTTTGAGAAGCCATTCCTTTATCTTGCA
AGGAAGCTGGCTGGTGATCCCAACATTCACTTCGTTGAAGCTGTGGCTCTTAAGCCCCCG
GAAGTGACATTCGACTTGGCCATGCAGCAACAGCATGAGGCTGAGCTTGCGGCTGCAGCG
GCGCAGCCACTGCCAGATGACGATGACGATCTGATCGAGTAGAGAGAGGATCACGAGTCT
TGTCTTATCAATCAATACTTTGAGAGCCGGAGACTTGTGCGAGTCTGGTTTTTAGGTTGA
AGGCTTGATTTGGAGTGGTCAAGCCGGATGTTTTTCCTGTCTGCCTTGCCTTGTCTGGTG
GGCTGCAAACTGTTTGTGTGAACATTGATCTACATCATGTTGTTTGCCATGGATTTGTTG
TTGGCCACCTTGATGGTTCATCAGTATTATTATGCCTTGCTGGCTCACTGAAAAAAAAAA
AAAAAAATCTTTTACATCTGCAAAAAAAAAAAAAAAAAGTTATGCAGTTTTTAAGCGTTT
GTGTCTGTTGGACATGTAGACAGCGAGTGGTTCTTACGACATTGTTGTGTTTTGACGCTG
CAGATGGCCTGAAGAACACAGCAGACGTGACACAAACAGTTTGAATGTCACCACTGTCGA
ATTTCCAATTGCATTTCCAGCGTCCTGTTGAACTTATACGGTGTCCAGTCTTCTTTTTTA
GTTTTATGTACCATAATACTTGTTGGAGAGAACCAGTCGTTGGAGAGAACTAGTCTATCT
CCCCCAACATGTACCTAGGAACTGAGGGAGTATCTTTCATGTCCATCTTGAGGAAGTACC
TTTCATGTACTTCCTCTGTTTTTTTAGTTTGCATATAAGATTTGATTAAAGTCAAGTGAT
ACATAGTTTGATCAAATATATATCAAAAGATATCATTTCATATTATAAATGTTTAAAAAA
AAAAAAAAAAA

Homology of Contig U35_14667 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g49890.2	200	2e-138	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi2g15730.1	222	2e-137
Arabidopsis v10	AT5G55190.1	221	2e-133	\| Symbols: RAN3, ATRAN3 \| RAN GTPase 3 \| chr5:22392285-22393957 FORWARD LENGTH=221