barSeed - Barley Seed Development Database

Probe CUST_7280_PI390587928

Source Contig U35_14671

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7280_PI390587928	Hv_44K_v2	TATATTGTTTTCTGATGTGTTTTCACTTTGCACTTGCATGCTGGAACATGGGAGGAAAAG	379	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364479	1679	2e-24	924 - 983	100	60 / 60	plus	ABC01985 ABC01988 ABC17644
MLOC	MLOC_7249.1	271	6e-24	140 - 198	100	59 / 59	minus	ABC01985
MLOC	MLOC_29090.1	603	3e-22	38 - 96	98	58 / 59	plus	ABC01985 ABC01988
JLOC1	JLOC1_4782.1	274	3e-24	140 - 198	100	59 / 59	minus
Harvest21	ABC01985	939	3e-25	380 - 439	100	60 / 60	plus	ABC01985
Harvest35	U35_14671	947	3e-25	380 - 439	100	60 / 60	plus

Contig Sequence (947 bp)

>U35_14671 947 Hv_44K_v2
TCGTCTGGGTTCAACAACTGTCTGCGGCAGGATGAGACCTTCGCTCTTCCCAGAATCCAC
TCTCTTGTTTGACAGAGATACGTGCATGACTGGGAGGACTGCATACATGAAGCATCTTGA
TAAGCTGTATAAGATGCATGATATTGCCTGGTTTACTCCAGTGAAGCTTTTTAAGGCGTG
CAGCCGTGGTATGCCTATGCAATAGCTGTGTCAATCCTCTGCACGACTAATCTTTCAGTC
CCATTGAAGGTGCGTCCATAATTTTCTTGTCATACACTACTAGGGAATATACTTCTCTTG
ATGTCGCATACCATCTATAGTAGCTGTCTATTTTTCTCGATGTAATTATCTTTTGGGATG
GTTACACTGCTTAGTGCAATATATTGTTTTCTGATGTGTTTTCACTTTGCACTTGCATGC
TGGAACATGGGAGGAAAAGAACCTCAATTCATGGGGCTAATGGTAGGGCACCCAGGAGGT
GCAGCACCGGATCCGCATCACCCTCTCCTCCAAGTCCGTCAAGAACCTCGAGAAGGGTGG
GTGCCCGGTGATTGCAGTTGCGCCTGACGCAAAATCTGGGGCCGCGCGCTGGCGGTCACC
TGCGCCTGACGCAAAATCTGGGCGTAGCTTGGCGCCGGAATGCCATTTCTCTTCACTGTG
TGGATCTGCGTGCGCGCGGGCTGACGGTCCAGACGCCAGCCGATGGGCAGCCTCGCCGGC
GGGGTGGTGGCCAGGCGGCCGCGGTTCCTGTGCATGCACGTGTTCCGGACCAGCGGCGAG
ATCATGCTGAAGCAGGTGGTGGGGAATTGGCCTGACGAGGTCACGGTGCGCTTCGACCTC
GTCTTCGCCGACGCGCCCTTCCCCGCCGAGGGCAAGTCCGACGTCGACGACATCTTCGAC
CCGCCCTACTACGAGTGGTTCTAGTTTGACAAAAAAAAAAAAAAAAA

Homology of Contig U35_14671 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None