barSeed - Barley Seed Development Database

Probe CUST_7278_PI390587928

Source Contig U35_14673

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7278_PI390587928	Hv_44K_v2	ATACATGGCTCACTATTGACGTGTCTGAGATTTGGTGTCATCGGTTGTCAAAATTTCAAA	624	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.268	1.267	1.137	0.946	0.364	0.343
Raw	3975.147	6239.777	4898.577	6384.183	863.163	892.311

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_34961.1	909	4e-23	696 - 752	100	57 / 57	plus
Harvest21	ABC01986	698	3e-25	625 - 684	100	60 / 60	plus	ABC01986
Harvest35	U35_14673	698	3e-25	625 - 684	100	60 / 60	plus

Contig Sequence (698 bp)

>U35_14673 698 Hv_44K_v2
CGCGCCCCAAGAACCACCGGCTCCCCTCCTCCCCCCGCCCGCAGCCATGGCGACCGAGCT
GGCGTACGCGCCGCCGATGAAGTCCGGCAAGGCCGGCTTCGAGGGCCCGCAGGAGGCGCA
GCACCGCATCCGGATCACCCTCTCCTCCAAGAGCGTCAAGAACCTCGAGAAAGTGTGCTC
CGATCTGGTGAGGGGCGCCAAGGACAAGCTGCTCCGGGTCAAGGGCCCCGTCAGGATGCC
CACCAAGGTGCTCAACATCACCACCAGGAAGTCGCCGTGCGGAGAAGGTACCAACACCTG
GGATCGGTTTGAGATGCGGGTGCACAAGCGGGTGATCGACCTCGTCAGCTCCCCGGACGT
TGTCAAGCAGATCACCTCGATCACCATCGAGCCCGGTGTTGAGGTCGAGGTGACCATCAG
CGACCAGTAGAGAGCTATGCCTTTCTTACAAGTGTGGAGAGACCAGCCAACCAAGACATA
TTTTTGAACGTTTGGTAGTATATCAACTGGGTTTTGTATGGGTTGTTAGGTTCTTTGCCT
TGTGATTCAGAGTACCTCTTGTCGTCTGAGATATCATCTTGAATTTTCGTCGCCCTTTGG
TGTGTTGCGCTGGATTGGATATTTATACATGGCTCACTATTGACGTGTCTGAGATTTGGT
GTCATCGGTTGTCAAAATTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14673 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g04290.1	129	3e-73	protein\|S10/S20 domain containing ribosomal protein, putative, expressed
Brachypodium v1_2	Bradi1g51650.1	128	4e-78
Arabidopsis v10	AT5G62300.1	124	9e-67	Ribosomal protein S10p/S20e family protein \| chr5:25021388-25022235 REVERSE LENGTH=124