barSeed - Barley Seed Development Database

Probe CUST_7232_PI390587928

Source Contig U35_2333

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7232_PI390587928	Hv_44K_v2	TGTATGTTCTATCCTGTATTTTGACTTTCCCAAATTCGAACCTCTATTGTATCAGGGCTG	1958	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_31768.1	1464	2e-24	1348 - 1407	100	60 / 60	plus	ABC06886 ABC06888
JLOC1	JLOC1_20830.1	1450	8e-25	1308 - 1367	100	60 / 60	plus
Harvest21	ABC06886	1677	3e-25	1510 - 1569	100	60 / 60	plus	ABC06886
Harvest35	U35_2333	2036	3e-25	1959 - 2018	100	60 / 60	plus

Contig Sequence (2036 bp)

>U35_2333 2036 Hv_44K_v2
ATTTCTTGCCACTGACGGGTCCAGGTCCACCGACGCAGCCTCTCCTTCTTGGTGAATCGT
CATCGGTCCGGTCGCCCCCCCACACACACTTCGACTGGACGCCGCGAGATCGCCGCGCAC
TCCCTTGAGCCACAGCCAGCGCCAGCGCCAGCGACCCAGATCCCTTGCGCTCCACCCGCC
GGATGCCGGACATGGAGGAGTCCGCTCAGCCCAAGCCCGCCGACCCCTCCGACCCGGAGC
TCCCCAACGGCGCCGGGGACACGGAGGCGCCCGTCACCGAGCCGCCTGCCGCCGCGCCGG
AGGCAGCAGAGGAGGAGGAGGAGGATGCGGTGGCTGCGGAGGAGGTCCCGGAGAGATCAG
CGCCGTCCAAGGACGCGGGGACGAACGCGGACGGCTGGCGGCCCTACACCATGGGGGAGC
TGCTCGGGGAGGCCGCCGAGGCCGCCGCCGGGAGATCCGACTCCGCCGACGGGAATGGCC
CCGGATCCGCCACGCCCGAGCGCTCCAGCCAGGACAGCCTGCAACTCTCAACCCATCATG
ATGTTGCCATGGACTTGATAAATAGTGTCACTGGGGTTGATGAGGAAGGTCGCTCTCGCC
AACGTATTCTTACCTTTGCAGCCAAAAGATATATTAGCGCCATTGAAAGAAATCCAGAAG
ACCCTGATGCATATTATAACTGGGCCCTAGTTCTCCAGGAAAGTGCAGATAATGTGGATC
CTAACTCTGATTCTTCAAAAGATTCATTACTTGAGGAGGCTTGCAAGAAGTATGCTGAAG
CTACACGACTTTGCCCAACACTGTATGATGCATATTACAATTGGGCTATCGCTATCGCTG
ATCGGGCCAAAATGCGGGGGCGTACCAAAGAGGCTGAAGAACTCTGGCAGCAGGCTATAA
GGAACTACGACAAGGCAGTCCAGTTAAGCTGGAACAGCCCCCAGGCTCTCAACAACTGGG
GCCTTGGACTACAGGAATTGAGTGCGATTGTTCCTGCTAAAGACAAGCAAACAATCATAA
AAACAGCTATAAGTAAGTTCCGTTCTGCCATCCAGTTGCAGTTTGACTTCCACCGGGCTA
TTTACAACCTCGGAACTGTCCTGTATGGCTTGGCTGAGGATACCTCGAGATCTGGGGGTC
CTGATATCTCTCCAAATGACCTGTATAGTCAGTCTGCTATTTATGTTGCAGCTGCTCATG
CATTGAAGCCAAATTATTCGGTTTATCGCAGTGCTCTACGGTTAGTCCGCTCAATGCTGC
CTTTGCCATATTTGAAAGTGGGATATTTGACTGCTCCTCCGGCAGACGACCCCATTGCAC
CACATAAACATTGGGAGAGGTCACAGTTCATCTTAAACCATGCGGAACTACAGCAGGTCA
ATGCTTCCGAAAGCGCTGCTGTCAAACCAAACGCGCTCGTGGAGAAAGCCAAAAGGTTTA
TCAAGGTAGACGTTGCGGACATAGTTTCAGTGTCCACGTGCTCCGATCTAACGCTGCCGC
CTGGTGCTGGCCTCTGTATAAACACAACTCATGGGCCCATGTTCTTGGTTGCTGATACCT
GGGAGTCTCTTGATGGTTGGCTAGACGCGATACGTCTTGTGTACACCATTTTCGCAAGGG
GGAAGAGCGATGTCCTGGCGGGCATCATCACCGGCTGATCGATGATGCCATGTTGTGTGT
GTTGTGACTAGCTGGGTCTGGACAAAGCAACATGTATATCAGTATGCATTCTGTGTCAAT
TCAAAAAAACCCACCACAGTTGTTTTTTATGTATGCCCTTACTGCTCCGATGTGATCTTT
CACAGCTTGTGTAGAGTAATGTGTTCAACCATCCAAACCATAGGCGGCATTGTTTTGTAC
CTGTAACACATATATACCTTCAAGTTCAAATGTATGACTTGTAATAGACGACGGATGAGA
AGATGAGTTTGTACTGTCATCCATCTAGTTCAAATGTTTGTATGTTCTATCCTGTATTTT
GACTTTCCCAAATTCGAACCTCTATTGTATCAGGGCTGNAAAAAAAAAAAAAAAAA

Homology of Contig U35_2333 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g02270.1	483	protein\|expressed protein
Brachypodium v1_2	Bradi1g77650.1	492
Arabidopsis v10	AT5G41950.1	565	Tetratricopeptide repeat (TPR)-like superfamily protein \| chr5:16785825-16789360 FORWARD LENGTH=565