barSeed - Barley Seed Development Database

Probe CUST_71_PI390587928

Source Contig U35_7800

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_71_PI390587928	Hv_44K_v2	GATGTTTTTCAGATGCTACCATGCATCTTCAGGAATTATAGAACATATCTACTGTTTCCA	602	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59632.1	4059	2e-24	3952 - 4011	100	60 / 60	plus	ABC17850 ABC19513
MLOC	MLOC_59632.2	4173	2e-24	4066 - 4125	100	60 / 60	plus	ABC17850 ABC19513
JLOC1	JLOC1_38817.1	4096	8e-25	3988 - 4047	100	60 / 60	plus
Harvest21	ABC17850	680	3e-25	19 - 78	100	60 / 60	minus	ABC17850
Harvest35	U35_7800	680	3e-25	603 - 662	100	60 / 60	plus

Contig Sequence (680 bp)

>U35_7800 680 Hv_44K_v2
TCGGTGATTGGTGATGTTAATGTTCATACTCAATGGAAATCAGTCCTATAATGGCAGTGC
TCACTCGCTTTACCCTTCTGGCTACCTTGCACTCGTTGCCGACATGTAGTGTTTATTTTT
TGTGCCAGTTGAACTGTTACTTGTTACTGCGTTTTGAAGAACATATAAGCTCCAATTGCT
CACCTTTTTTGGTGTTTGGGAGACTTTGAAATAGTATGAAATATCCAGAATCAAGCATTT
TGGCTTGTTGAAATCTTCACATGGACCTGGAGGATACAAATATGCAATGATTAGCTTGTT
TAGAGCTTTGCACTGAACATGTTACTAGTAGGAGTGTAGGACTAAAGATGGTGGCTACAA
GTGCCCAGAGTTGCGTCGACTTCCCGTTGCGATTGCTTCTGCACAAGGAATGCCCCGCAT
CATTTTGCTCAAGTGTGATCGCAAGGCTGTAGCAAGCTGGCGATTGAAGTTGTTGATTCA
TATCCTTTTTTTTGTCTTTATAAAAATGAATTTTGTGGATCCAATAGATCTTAAAGAGTT
GCAGCTCGTCCTGCCTGTAAATTTTCCAGTGTTAGTTTGGACCATTATATAGGCTTGCTG
GAGATGTTTTTCAGATGCTACCATGCATCTTCAGGAATTATAGAACATATCTACTGTTTC
CACAAAAAAAAAAAAAAAAA

Homology of Contig U35_7800 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None