- Probe CUST_7106_PI390587928
- Source Contig U35_22449
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_7106_PI390587928 | Hv_44K_v2 | ACTCAGACAGCTTGCCTGGAACTGGAAGCATAGGTTCAAAGTTTGATATCTTATGTGGCT | 675 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.333 | 1.326 | 1.440 | 1.019 | 0.298 | 0.354 |
| Raw | 38.970 | 60.652 | 56.971 | 61.671 | 6.224 | 8.438 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_19714.2 | 4230 | 2e-24 | 1254 - 1313 | 100 | 60 / 60 | minus | ABC15698 |
| MLOC | MLOC_19714.3 | 1907 | 2e-24 | 1154 - 1213 | 100 | 60 / 60 | minus | ABC15698 |
| MLOC | MLOC_19714.4 | 4186 | 2e-24 | 1095 - 1154 | 100 | 60 / 60 | minus | ABC15698 |
| MLOC | MLOC_19714.1 | 4313 | 2e-24 | 1315 - 1374 | 100 | 60 / 60 | minus | ABC15698 |
| JLOC1 | JLOC1_13662.4 | 4458 | 8e-25 | 2940 - 2999 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_13662.3 | 4440 | 8e-25 | 2918 - 2977 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_13662.2 | 4427 | 8e-25 | 2909 - 2968 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_13662.1 | 4406 | 8e-25 | 2884 - 2943 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC17720 | 734 | 1e-24 | 676 - 734 | 100 | 59 / 59 | plus | |
| Harvest35 | U35_22449 | 735 | 3e-25 | 676 - 735 | 100 | 60 / 60 | plus |
Contig Sequence (735 bp)
>U35_22449 735 Hv_44K_v2 GCACAAATATTTCTCAGGTTAATGGAAGTATAGAATGTGTGGAATACGTAATCTGTCTGA TTGATTGTTACTGCAGTCGTCTCCTTCCTTGGTTGTTTACTTCCGGTGGTCTCAATGAAC TTGCTTTGAGCTTTGCTCCGCGACTGTGGGATGAAATTGGGGACTTGGTTACTCTGGATA GAATCAGATCACAGGGTCTTCTTGACTCGCTAATGATGGGAATGAAGTTATTAGTAGGAG TCTGCACAGAGGAACAACAGTCATTGATTGTTCAGAAAGCATGTGGCATAGTATCATCGA AGCTGTCTCTCCCAGTGAATACAATGACACATCATCTGTTGTCTGTAGAGGAGTTAGTTC CTGCACACTCTGTTGAAGATACAGCCCTTGTGTGTATGCTTTCATCAGTAATAGTCGGTC TTCGGCCTCGAACACCTTTACCAGAAATGATCATGATTATTAACCTCTTTTCGGTCTTTC TACTGAATGGACATATACCAGCTGCTCATGCATTAGCTTCTATCTTCAACAAATATGTAC AGAATTCAGACTTCTCACATGAGAATAAGCTGGATAAGAAACTTGATGTTATTCTTGGGG AATGTTTCTCAATTGTATTAACCAGCAGCAGTTTGAAGATGTCTCACTCTGCTGCTGTCA CTTCAGATAGTGCTAACTCAGACAGCTTGCCTGGAACTGGAAGCATAGGTTCAAAGTTTG ATATCTTATGTGGCT
Homology of Contig U35_22449 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi1g55667.1 | 1143 | 3e-116 | |
| Arabidopsis v10 | None |