barSeed - Barley Seed Development Database

Probe CUST_698_PI390587928

Source Contig U35_45736

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_698_PI390587928	Hv_44K_v2	TTACTGCTACAAAATTGGTGCGCCTAAGTTTTGGCCCTCAATCCCATTTTCTTCTTGCAG	322	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_1191.1	232	2e-24	156 - 215	100	60 / 60	plus	ABC44948
MLOC	MLOC_46027.1	373	7e-23	317 - 373	100	57 / 57	plus	ABC44948
JLOC1	JLOC1_29836.1	547	8e-25	208 - 267	100	60 / 60	plus
Harvest21	ABC44948	635	3e-25	323 - 382	100	60 / 60	minus	ABC44948
Harvest35	U35_45736	635	3e-25	323 - 382	100	60 / 60	minus

Contig Sequence (635 bp)

>U35_45736 635 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAAATAAGTATAACAGAATAAAAGATTGCAAATAAAATGTATA
TTTCATTTAGTAGCATATCACATAAATACAAAACATCATCCACGACTCCATGCATTAAGG
TTCAACGCCTAACAAGGGCACAAGGGCACATCAAAATAGTTTTACATGCGCACAACAGAA
TATTTCTGCAAGTACAAGTGCACGAAAAAAGGACCCAACAAGTGCGTAATCGCACATAAA
GAAAGTTCCACAAAGATTGGATGAGAACCACAAGTTTCTTCTCATCCTCTTCCTCTGCAC
AATATGCTCTTGCCATTGTCGCCTGCAAGAAGAAAATGGGATTGAGGGCCAAAACTTAGG
CGCACCAATTTTGTAGCAGTAAACATGAGGGAGATGAGGATCGACTTTGCTTATAGTACA
CATAAGAAAATAATGGCTGGTAGACAAACTGTTTAATATACATACAACAAAATAGCTATC
GTTACTGTTACTTGATGAGTATAAAATATTCTATGTGATTCACTTCGTTGATAAGAATCT
GCATGTAGAAAAGACTGACTCATAGCTATTTTCTATAACATTACCTAAAAGGCTCAAGTA
CATGCATGGGGAGCCTATCACAGTGATATGTGCAA

Homology of Contig U35_45736 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None