barSeed - Barley Seed Development Database

Probe CUST_6925_PI390587928

Source Contig U35_24526

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6925_PI390587928	Hv_44K_v2	CACAATAAGCTTTGCAATGGCTTATTATAGAGGTTAATCCAATGTACACAGTTATGAGGA	426	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365161	3542	2e-24	3482 - 3541	100	60 / 60	plus	ABC11892 ABC15187 ABC19934
MLOC	MLOC_38413.1	2497	2e-24	2321 - 2380	100	60 / 60	plus	ABC04610 ABC19934
MLOC	MLOC_38413.2	2809	2e-24	2509 - 2568	100	60 / 60	plus	ABC04610 ABC19934
JLOC1	JLOC1_24974.1	2868	8e-25	2559 - 2618	100	60 / 60	plus
JLOC1	JLOC1_24975.1	2674	8e-25	251 - 310	100	60 / 60	minus
Harvest21	ABC19934	522	3e-25	427 - 486	100	60 / 60	plus	ABC19934
Harvest35	U35_24526	522	3e-25	427 - 486	100	60 / 60	plus

Contig Sequence (522 bp)

>U35_24526 522 Hv_44K_v2
CAGCTCTCTCGGGCCTTTCGTCACCGGCAACACCTTGGAGCCCGAGGAGATCATCGAGAC
CTCTGTCGAGAAAATCGGCGACCTAACTTACTACAGCTATGTGCTGGAGACTCCACTGGC
GCTGACGGGCTCTCACAATCTGGCCAAGGCCACGGCCAAGGGGAACACGGTGGTGCTCTT
CGTCGCGAGCGCCAGCGACAAGCAGTGGCAGTCGTCGCAAAAGATTCTGAAGGCTATGGT
AGATTCATTCCAAGTATGATTCGCAGCAAGTGCATGCAGGCTTGTCTTGGAAACCTGGAC
ACGGGTTTGCTTGTTACTCCTACATCTGAACCCTGGGTATTTCCACGAGAGAAACTAGTA
CTATTACAGTATTACTTGTTTTTGAGGCTTGGAACACTTGTAATGAGCTACTTGACAAAC
TAAGGTCACAATAAGCTTTGCAATGGCTTATTATAGAGGTTAATCCAATGTACACAGTTA
TGAGGATAAATTGTTCTTTTCTTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_24526 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None