barSeed - Barley Seed Development Database

Probe CUST_686_PI390587928

Source Contig U35_21788

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_686_PI390587928	Hv_44K_v2	GTTTCATGTGTCATGTGTCTTGATTTTGGTTCTTTTATATCGCGTGATTGGCTTCAAAAA	737	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63538.1	687	9e-22	393 - 447	100	55 / 55	plus	ABC00410
JLOC1	JLOC1_41627.1	879	5e-22	396 - 450	100	55 / 55	plus
Harvest21	ABC00410	1799	3e-25	13 - 72	100	60 / 60	minus	ABC00410
Harvest35	U35_21788	809	3e-25	738 - 797	100	60 / 60	plus

Contig Sequence (809 bp)

>U35_21788 809 Hv_44K_v2
CTCCTCCAGCACTCTCACTCTCCCCTTCGCCAAGCAGAGCAGAGCAAGCAGAGGAGGGCT
CACCGGACTCCGGCCGGGCGGCGGCATGAAGCGGACCAGAGCGCAGAACCCTAAGGCGCA
GGAGCAGGAGCCACCGCAGGACGCCGGGAGCAACACCAACCCGAAGCCGCAGCGCCGGGC
GAAGCAGCCGAGGCAGCCCAAGAAGACCGCCGTGGCTCGAGAGGCCGCTGCGGCGGCCGC
GACCGCTGCTGCTGCCGCCGCCGTGTCACCCGCGGAGGAGATGACGCCCGTCGTCCCCGA
CGTCAGCGTCGGGGCGGGAGGAGGAGGAGGGGAGGTGGCGTGCGGGCTGCCGGCGGAGTG
GGACGAGATGGACGGGTCGCCGTGGTGGACGTTCGGGGTGGAGGAGGAGAAGCTGCTGGG
GTGGTTCCCGTTCGTGGAGGAGGACTTCCGGCCCGTCTCCGTCGCCGCCGCCGAGCCCGC
GTGCTTCGACGACGACGACATCTGGAGGATCCACCAGATCTACGAGATCCCCAGCTACGC
CGCCAAGTGAAGCGAAGCCGAGAGATGAAAACGCGAGCGGCATTCGGCCCGCCGCTTCGG
GAAAGTAGATAGGGGCTGCCGCCGCCGGTAGTGAGTGCTTTTGCGGTGCAGCGACGGGGA
ACGGACTAATCCAGGAGGCCACTAATATCATCACCTTATTAGGCGCTAAACAAGATGAGA
ATTGCAACGGCGATGCAGTTTCATGTGTCATGTGTCTTGATTTTGGTTCTTTTATATCGC
GTGATTGGCTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_21788 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None