barSeed - Barley Seed Development Database

Probe ABC00410

Source Contig ABC00410

barSeed

Links

Affymetrix Source Sequence (1799 bp)

>ABC00410 1799
TTTTTTTTTTTTTTTTTGAAGCCAATCACGCGATATAAAAGAACCAAAATCAAGACACAT
GACACATGAAACTGCATCGCCGTTGCAATTCTCATCTTGTTTAGCGCCTAATAAGGTGAT
GATATTAGTGGCCTCCTGGATTAGTCCGTTCCCCGTCGCTGCACCGCAAAAGCACTCACT
ACCGGCGGCGGCAGCCCCTATCTACTTTCCCGAAGCGGCGGGCCGAATGCCGCTCGCGTT
TTCATCTCTCGGCTTCGCTTCACTTGGCGGCGTAGCTGGGGATCTCGTAGATCTGGTGGA
TCCTCCAGATGTCGTCGTCGTCGAAGCACGCGGGCTCGGCGGCGGCGACGGAGACGGGCC
GGAAGTCTCCCTCGTGCCGAATTCGGCACGCCGGCCAACACCAAATCTCCCACTGCAGCT
CTCGAATCTTCCCCGAGCATCGACCATGTCGGCCTACTGCGGAAAGTACAAGGATGAGCT
CATCAAGAACGCTGCCTACATTGGCACCCCTGGCAAGGGTATCCTCGCTGCTGATGAGTC
CACGGGCACCATCGGCAAGCGCTTCGCCAGCATCAATGTTGAGAATGTTGAGGACAACCG
TCGCGCCCTCCGTGAGCTCCTCTTCTGCACCCCTGGTGCCCTTCAGTACCTCAGCGGTGT
GATCCTCTTTGAGGAGACCCTGTACCAGAGCACCAAGGGTGGCAAGCCGTTCGTTGACAT
CCTCAAGGAGGGCAATGTCCTCCCAGGCATCAAGGTGGACAAGGGTACCGTCGAGCTCGC
TGGAACCAACGGTGAGACCACCACCCAGGGCTTTGATGACCTTGGCAAGCGCTGCGCCAA
GTACTACGAGGCTGGTGCCCGCTTTGCCAAGTGGCGTGCCGTTCTCAAGATTGGCCCAAC
CGAGCCATCACAGCTTTCTATCAACCAGAATGCTCAGGGTCTGGCTCGTTATGCCATCAT
CTGCCAGGAGAACGGTCTGGTGCCCATTGTCGAGCCTGAGATCCTTGTTGATGGACCTCA
TGACATTGACCGCTGTGCTTACGTCACTGAGATGGTCCTTGCTGCCTGCTACAAGGCCCT
CAACGACCAGCATGTCCTCCTTGAGGGTACCCTCCTGAAGCCCAACATGGTTACCCCTGG
TTCTGACGCCAAGAAGGTGACCCCTGAGGTCATTGCTGAGTACACCGTCCGCACCCTCCA
GAGGACTGTCCCTGCTGCCGTCCCTGCCATCGTCTTCCTCTCCGGTGGACAGAGCGAGGA
GGAGGCAACCCTGAACCTGAATGCCATGAACAAGCTCCAGACCAAGAAGCCTTGGAACCT
TTCCTTCTCCTTCGGACGTGCCCTCCAGCAGAGCACCCTCAAGGCCTGGTCTGGCAAGGC
GGAGAATGAGGAGAAGGCCAGGAAGGCGTTCCTGGTGAGGTGCAAGGCCAACTCCGAGGC
CACCCTTGGCACCTACAAGGGTGATGCCACCCTCGGCGAGGGTGCCTCTGAGAGCCTCCA
CGTCAAGGACTACAAGTACTGATCTGCCTTCGGTGCTGCGGCCCGTTTGGGTGTCCTGCT
TACCAGTATTATCATTTGGTTTTCAGAGTCCTGATATATATCGAACCTAGTATGGAACTT
GTGCTCTCAAAATACCGTAGGTAGTTTGTTTTTGGAGTCGAATATCCTGTTTTTGGAGTT
GAATACCAAGCGGTACCGCATATCGTAAATTGGAGCAGCAGGTTTTGTTCTATGGTCCAG
TAATTTGGCTGCTACAATGGTAAAACCTGTTATATATGCTGAGTAGTAGTACACATGTC

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_14013.2	1635	0.0	180 - 1601	98	1388 / 1422	CUST_30778_PI390587928	ABC00410 ABC00417 ABC00940 ABC00976
MLOC_14013.1	1285	0.0	262 - 1251	99	984 / 990	CUST_30778_PI390587928	ABC00410 ABC00417 ABC00940 ABC00976
MLOC_73299.1	1497	0.0	123 - 1342	93	1136 / 1220	CUST_4432_PI390587928 CUST_33120_PI390587928	ABC00410 ABC00417 ABC00940 ABC00976 ABC31967
MLOC_73299.2	1210	0.0	284 - 1077	93	739 / 794	CUST_33120_PI390587928 CUST_4432_PI390587928	ABC00410 ABC00417 ABC00940 ABC00976 ABC31967
MLOC_63538.1	687	0.0	94 - 447	99	352 / 354	CUST_686_PI390587928	ABC00410
AK355231	4149	8e-157	3839 - 4149	99	308 / 311	CUST_36522_PI390587928	ABC00410 ABC02736 ABC02737 ABC02738 ABC07734 ABC37622