barSeed - Barley Seed Development Database

Probe CUST_6869_PI390587928

Source Contig U35_10199

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6869_PI390587928	Hv_44K_v2	TAAAATGGGGAGTATCATTTCCATGGCCCTCCTCTTCGTCTTTGGAGTCATGTTGCTCAA	34	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39346.1	1439	2e-24	1295 - 1354	100	60 / 60	minus	ABC44874
MLOC	MLOC_39346.2	1144	2e-24	1000 - 1059	100	60 / 60	minus	ABC44874
JLOC1	JLOC1_25648.2	1106	8e-25	48 - 107	100	60 / 60	plus
JLOC1	JLOC1_25648.1	1401	8e-25	48 - 107	100	60 / 60	plus
Harvest21	ABC32201	624	3e-25	25 - 84	100	60 / 60	plus
Harvest21	ABC21161	632	3e-25	35 - 94	100	60 / 60	plus
Harvest35	U35_10199	634	3e-25	35 - 94	100	60 / 60	plus

Contig Sequence (634 bp)

>U35_10199 634 Hv_44K_v2
CTCAACACTTCTAATCTTATTAGTCTGCTAGTGCTAAAATGGGGAGTATCATTTCCATGG
CCCTCCTCTTCGTCTTTGGAGTCATGTTGCTCAATGCCGATGTTGGGTCGTGCGGCTGCT
TCAAGCGCATCTTCGCCTTCGGCGACTCCATCATTGACACCGGCAACTTCCGCACAGGTT
CGATGTGGATGCCTCCTTATGGAGGGACCTACTTCCACCACCCCACTGGCCGCTGCTCCG
ACGGGCGTCTAATCATCGACTTCTATGCACAAGCATTGGGCCTGCCACTGCTGCCGCCGA
GCGGGCCTGAGGAGAATACGGGGAAGTTCCCGACCGGTGCCAACTTCGCCGTGTGGGGCT
CGTTTGCGCTGAGCCCGGACTACTACCGGAAAAGGTATAACTTAAGTATGGGGCACGCTT
GCCTCGACTCACAGCTCCGTTCCTTCAAGACAGTGCTCGCACGGATAGCTCCTGGAAAAG
CTGCCACCAAAAGTCTCCTCAGCGATTCGCTCGTCGTCTTTGGCGAGATCGGCGGCAACG
ACTATAACTTCTGGTTCTTTGATCCTCGCCGCAGTAGGAATACGCCCCATGAGTACATGC
CTGACGTAATAACCCGCATAGGTGCCGGCGTCCA

Homology of Contig U35_10199 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g46210.1	381	2e-65	protein\|GDSL-like lipase/acylhydrolase, putative, expressed
Brachypodium v1_2	Bradi2g45230.1	368	4e-76
Arabidopsis v10	None