barSeed - Barley Seed Development Database

Probe CUST_6863_PI390587928

Source Contig U35_22174

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6863_PI390587928	Hv_44K_v2	TTTTTCTTTTACTTCCTGCTTTGATCAAATTGGAACTAGCCTTGTAGATCGGAATAACTG	520	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354276	2606	2e-24	2476 - 2535	100	60 / 60	plus	ABC06509 ABC18516 ABC24975
MLOC	MLOC_29330.1	1026	3e-21	917 - 973	98	56 / 57	plus	ABC24975
MLOC	MLOC_29329.1	1440	3e-21	1132 - 1188	98	56 / 57	plus	ABC24975
JLOC1	JLOC1_19543.4	1079	2e-21	782 - 838	98	56 / 57	plus
JLOC1	JLOC1_19543.3	1430	2e-21	1133 - 1189	98	56 / 57	plus
Harvest35	U35_22174	686	3e-25	521 - 580	100	60 / 60	plus

Contig Sequence (686 bp)

>U35_22174 686 Hv_44K_v2
AGCCTAAAAAAGCTACAATCATGTTAATCAATCTGTCATGATATTGTTCCTGCTTCAAAA
TGCACCCTGGGGTGTTAGTTAACAGTCCTCTGAATATTGATTTTCTATTACATAATTTGT
CGATTTGTGCAGGCTTTCATTCATGATGGGCCGACCTTGAAGTCTTAACGTTTACCCTTT
CCAACATGCAACACTCGCGATGTGGTGCTTAATCCTGCTAATTTTTTTTGTCTATTAATT
TTTATGTTTTTTTCACCTCAGATATTGTATTAATTTCGGTTGGGTTCTAACTAGAGATGC
ACATAAATAACCTGGTTCTGGGTATCATAAAACAAACAAGGCACAAACCTAGAAGGTTAT
TGATTATATGCTGCAACCCATTTAATTAAGCTGGTTTTCTTGACACCATTTTCTATTGCA
GGCTGTTGAATATATACAGTTTTTGCAAGAGAACGAACAGAAGTGTGGTTGGGTGAGGTC
TCGATACAACATCTCACTTTTTGTTTGTTTCAACAATGCATTTTTCTTTTACTTCCTGCT
TTGATCAAATTGGAACTAGCCTTGTAGATCGGAATAACTGAAAATTGATGTGTAATATTA
GGTCTGTGATTGCAGTGTGTAAAATTGGCCTATTTATTCGATTCTTGTCATATAAAATGT
GTATTTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_22174 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None