barSeed - Barley Seed Development Database

Probe CUST_6860_PI390587928

Source Contig U35_22178

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6860_PI390587928	Hv_44K_v2	ACCACCACAAGTGTGGTATATATGATCAACTGGGAGCACACGCCCCATGACTACAAAAAA	493	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14814.1	1426	9e-22	1316 - 1370	100	55 / 55	plus	ABC03239 ABC03241 ABC03243 ABC42502
MLOC	MLOC_14813.1	347	9e-22	36 - 90	100	55 / 55	plus	None
JLOC1	JLOC1_10120.1	1606	5e-22	1399 - 1453	100	55 / 55	plus
Harvest35	U35_22178	564	3e-25	494 - 553	100	60 / 60	plus

Contig Sequence (564 bp)

>U35_22178 564 Hv_44K_v2
AACGCCTACTACGCAACCTGTGGCGCAGCGAGGCCTGCTGCACTCGGACCAGCAGCTCTT
CAACGGCGGCTCCCAGGACGCGCTGGTGCGCCAGTACGGCACCAACCCGGCGCTCTTCGC
CGCCGACTTCGTGGCCGCCATGATCAAGATGGGGAACATCGCCCCCCTCACCGGGACTAA
CGGCCAGATCAGGCGCAACTGCAGGGTCGTCAACAGCTGATCAATCGCTGACATGAATCA
GTGATCAACTGATCATGCTACGTGGTGATGGAGATGCCTGAAGCGTGGTTGGCTACGAAT
CGAAGGTAACCAACCATGCATGCATGCATGCATCATGCATGGCAGAATAAGAGCCGTTTG
GTTCGATTGTTACCTTAATTTGTCTGTGCTTCATCGTCATGTAAGTTGCCGGTCTGTGCA
GCACTAGCAACTCTCGAATGTGTATTTGCGACAAAACTGAGAGAAAAGAGGTGCATTTCT
GTAGACGCCGATAACCACCACAAGTGTGGTATATATGATCAACTGGGAGCACACGCCCCA
TGACTACAAAAAAAAAAAAAAAAA

Homology of Contig U35_22178 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None