barSeed - Barley Seed Development Database

Probe CUST_6840_PI390587928

Source Contig U35_22186

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6840_PI390587928	Hv_44K_v2	CGCTTGATGACTTATTAATGATCCATCTAATAGTACGCGGTGAAGTGATCTGGGAAAAAA	1400	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.204	2.531	1.292	0.745	0.246	0.237
Raw	79.602	143.871	63.220	56.426	5.707	6.784

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38893.1	900	9e-22	708 - 762	100	55 / 55	plus	ABC20093 ABC28529
JLOC1	JLOC1_25326.1	897	5e-22	712 - 766	100	55 / 55	plus
Harvest35	U35_22186	1471	3e-25	1401 - 1460	100	60 / 60	plus

Contig Sequence (1471 bp)

>U35_22186 1471 Hv_44K_v2
CACGCGTCCGCCGACACCGAGCCGTACGCCCTGGCCCGCGACAAGAGAGTCACGGATTTT
GCTGCTGCGTCGGGGATCGAGGTGTTCTCTCCTGTCAGCCACACCCTTTTTGACCCAGCT
GAAATCATAGAGAAGAATGGGGGCCGGCCACCGTTGACGTACCAATCGTTTGTGGCCACC
GCTGGAGAGCCCCCCAAGCCAGTGATGGAGGAATACTCTGTGCTCCCGCCAATCGGTGAT
ACCGGAGGATATGAGTTGTTGCCTGTGCCCAAATTGGAGGAGCTTGGGTATGGTGATCTC
AGCCAGGAGTACATTCCGCCATTCCGTGGCGGCGAGACAGAAGCTCTGAAGAGGATGAGA
GAGTCACTCCAGGATAAGGAGTGGGTTGCCAAGTTTGAGAAACCTAAGGGTGACCCTTCT
GCCTTCGTGAAACCCGCAACAACGGTCTTGTCACCTTATCTGAAATTCGGTTGCCTGTCG
GTGAGGTACTTTTACCACTGCATTCAAGATGTCTACAGGAGTGCCAAAACGCATACAAAA
CCACCTGTTTCGTTGGCTGGCCAGCTGCTGTGGAGGGATTTCTTCTACACAGTGTCTCTT
GGCACTCCTAATTTCGATCATATGGAAGGGAACCCAATATGCAAACAGATCCCATGGAGA
GAAAGCGAGGAGCTATTTGTTGCATGGAGAGATGGCCGGACAGGATATCCATGGATAGAT
GCCATCATGATTCAGTTGAGGAAGTGGGGTTGGATGCATCATCTTGCACGCCACTCTGTT
GCTTGTTTCCTGACGCGGGGTGATCTGTATATCCACTGGGAGCAAGGCCGTGACGTCTTC
GAAAGGCTACTGATAGATTCTGACTGGGCGATTAACAATGGCAATTGGCTATGGCTCTCC
TGCTCATCATTCTTCTACCAGTATCATAGAATCTACTCCCCAATATCATTCGGAAAGAAG
TACGATCCCAATGGAGATTATATCAGACATTTCATCCCAGTGCTGAAAGACATGCCCAAG
GAGTACATCTACGAGCCTTGGACTGCACCCCTGAGCGTGCAGGAAAAAGCCAGGTGCATC
GTCGGCAAAGACTACCCAAAACCAGTGGTTGACCATGAGGCTGCAAGTAAAGGATGCAGG
AGGAGGATGGGGGAAGCTTATGCGTCTAATCGCCTAGGCGGTAGCACTGTCAAAGGAAAT
TCCTCGAATTCATCGCGAAGGAAGTTGTGTCATGGGGGCCAAGATGTCCCCGATTCATCC
AAGTCCAAGCAACCGAGGAAGAGGAGCTGAACCCAGAGTAGAAAAGTCTTAACAAGAAGT
ATCTGACCCTTTTTAGGGAACTGTAGTATCTGACTCTCTTAACTTAATGGTTCTTATCAA
CTCTTCAATCGTGAGTCTAGCGCTTGATGACTTATTAATGATCCATCTAATAGTACGCGG
TGAAGTGATCTGGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_22186 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g10990.1	561	protein\|FAD binding domain of DNA photolyase domain containing protein, expressed
Brachypodium v1_2	Bradi3g07660.1	548
Arabidopsis v10	AT3G15620.1	556	\| Symbols: UVR3 \| DNA photolyase family protein \| chr3:5293475-5296548 REVERSE LENGTH=556