barSeed - Barley Seed Development Database

Probe CUST_672_PI390587928

Source Contig U35_14061

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_672_PI390587928	Hv_44K_v2	TTGCGATCTGGTTGTAGTAAGGAAACGTGCTGGGTGTCTCTGTAGCGCTGATATGATGCC	497	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38052.1	1142	2e-24	923 - 982	100	60 / 60	minus	ABC00014 ABC00040 ABC00041 ABC00075 ABC00082 ABC00094 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00657 ABC00660 ABC00669 ABC00676 ABC00684 ABC00701 ABC32001 ABC47839
MLOC	MLOC_38052.2	420	2e-24	201 - 260	100	60 / 60	minus	ABC00014 ABC00040 ABC00041 ABC00075 ABC00082 ABC00094 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00657 ABC00660 ABC00669 ABC00676 ABC00684 ABC00701 ABC32001 ABC47839
JLOC1	JLOC1_24707.1	419	8e-25	161 - 220	100	60 / 60	plus
Harvest21	ABC47839	612	3e-25	259 - 318	100	60 / 60	minus	ABC47839
Harvest21	ABC00684	648	3e-25	498 - 557	100	60 / 60	plus	ABC00684
Harvest35	U35_47053	612	3e-25	259 - 318	100	60 / 60	minus
Harvest35	U35_14061	650	3e-25	498 - 557	100	60 / 60	plus

Contig Sequence (650 bp)

>U35_14061 650 Hv_44K_v2
CCACAGCTCAAACCCCCCACTCAACCCCTAGCCTCCTCCTCCCTCTCCAGCTCCGATGGC
CCGCACGAAGCAGACTGCCCGCAAGTCCACCGGCGGCAAGGCCCCCCGCAAGCAGCTGGC
GACCAAGGCGGCGCGCAAGTCGGCGCCGGCGACCGGCGGCGTCAAGAAGCCCCACCGCTT
CCGCCCCGGCACCGTCGCGCTCCGCGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGCT
CATTCGCAAGCTCCCCTTCCAGCGCCTGGTGAGGGAGATCGCCCAGGACTTCAAGACCGA
CCTGAGGTTCCAGTCCTCCGCTGTCTCCGCCCTGCAGGAGGCCGCCGAGGCCTACCTCGT
CGGCCTCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCC
CAAGGACATCCAGCTCGCCCGCCGCATCCGAGGGGAGCGCGCCTAGGTTTTCGGTCGCCG
CTGTAGCAGTTCGTGTCTTGCGATCTGGTTGTAGTAAGGAAACGTGCTGGGTGTCTCTGT
AGCGCTGATATGATGCCTGCTGTCTGGTGATCTTTCCTGATGTCGTGATGCTGAAATGAA
ATGGCAATGAAAAGTTCAGTTATCTTCAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14061 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g05730.1	137	6e-89	protein\|histone H3, putative, expressed
Brachypodium v1_2	Bradi4g07840.1	137	1e-89
Arabidopsis v10	AT5G65360.1	136	3e-89	Histone superfamily protein \| chr5:26120099-26120509 REVERSE LENGTH=136