barSeed - Barley Seed Development Database

Probe CUST_667_PI390587928

Source Contig U35_14066

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_667_PI390587928	Hv_44K_v2	CCCCATGCCTGTACAATGTTTTGATGAACGCATCTGAGCTTTTGGCTCTGTTAGAAGAAA	830	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.616	1.877	1.217	0.584	0.155	0.108
Raw	540.202	588.412	340.594	256.526	25.292	18.053

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51390.1	1968	7e-23	1455 - 1511	100	57 / 57	minus	ABC00041 ABC00106 ABC00135 ABC00186 ABC00660 ABC00684 ABC32001 ABC47839
MLOC	MLOC_51390.2	672	7e-23	159 - 215	100	57 / 57	minus	ABC00041 ABC00106 ABC00135 ABC00186 ABC00660 ABC00684 ABC32001 ABC47839
JLOC1	JLOC1_32830.1	516	4e-23	3 - 59	100	57 / 57	minus
Harvest35	U35_14066	904	3e-25	831 - 890	100	60 / 60	plus

Contig Sequence (904 bp)

>U35_14066 904 Hv_44K_v2
ATCGCTCCAGCCAAACCCAAATCCAACACCGCCGGCGAAGCATCCAGGCCCAGACCCCGC
CGCTCCGATGGCCCGCACGAAGCAGACGGCGCGCAAGTCCACCGGCGGCAAGGCGCCGCG
GAAGCAGCTGGCGACCAAGGCGGCGCGCAAGTCGGCCCCGGCCACCGGCGGCGTGAAGAA
GCCGCACCGCTTCCGCCCGGGAACCGTCGCGCTCCGGGAGATCCGCAAGTACCAGAAGAG
CACGGAGCTGCTCATCCGCAAGCTCCCCTTCCAGCGCCTCGTCCGGGAGATCGCGCAGGA
CTTCAAGACGGACCTCCGCTTCCAGAGCTCCGCCGTGTCGGCCCTGCAGGAGGCCGCCGA
GGCGTACCTCGTGGGGCTCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGAGT
CACCATCATGCCCAAGGACATCCAGCTCGCCCGACGCATCCGCGGGGAGCGCGCCTAGGT
TCTCGGTCGCCGCCGGTGATGCTAGGTGGTTGTTGTTACCGGCTGACGATCCGGATCTTT
GCCGGGTTCTTCTGTTGGCTGGTGTTGATATGATGTGTCCTCTTGTCTGTTCCGATGCTG
GAATGAAATGGCAATGAAAAGTTCAGTTATCAAAAAAAAAAAAAAAAAAGCCTCTGTTTG
CTGCTTGATTGCTTTGTGATTTCAGTGTCGTAGTTGCAAAACTTAGCAAGGTTATGCAGT
GATGGGGGTTGAACAATGCATGATCCAGTGTCTTGATTTTGTGGGTTTGCCTGTGTGCCC
TGTTATTTTTGTTTGCTAGCTGTGTGGTTCAGTGTTTTTGCACCAATTTTCCCCATGCCT
GTACAATGTTTTGATGAACGCATCTGAGCTTTTGGCTCTGTTAGAAGAAAAAAAAAAAAA
AAAA

Homology of Contig U35_14066 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g05730.1	137	1e-87	protein\|histone H3, putative, expressed
Brachypodium v1_2	Bradi4g07840.1	137	2e-88
Arabidopsis v10	AT5G65360.1	136	7e-88	Histone superfamily protein \| chr5:26120099-26120509 REVERSE LENGTH=136