barSeed - Barley Seed Development Database

Probe CUST_665_PI390587928

Source Contig U35_14068

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_665_PI390587928	Hv_44K_v2	AACGAACGCCATTTTTGTTGGTAGAAATTTCTTGGAATTTGAGCATGAAACCCCAAAAAA	737	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16460.1	855	3e-22	360 - 415	100	56 / 56	minus	ABC00014 ABC00040 ABC00041 ABC00075 ABC00082 ABC00094 ABC00102 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00676 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC32001 ABC32138 ABC47839
JLOC1	JLOC1_11331.1	673	1e-22	178 - 233	100	56 / 56	minus
Harvest21	ABC00657	774	3e-25	704 - 763	100	60 / 60	plus	ABC00657
Harvest35	U35_14068	808	3e-25	738 - 797	100	60 / 60	plus

Contig Sequence (808 bp)

>U35_14068 808 Hv_44K_v2
TCGAGTTCTGTTGGCCTACTGAATCCCGCGCTCCCAGCCCCCCAAATCTCCAGAGCAATC
CCTCTCCTCAACCCCGAGCCCCGCCAGCCCCGATGGCCCGCACGAAGCAGACGGCGAGGA
AGTCGACCGGCGGCAAGGCGCCGCGGAAGCAGCTGGCGACCAAGGCGGCGCGCAAGTCGG
CCCCGGCCACCGGCGGCGTGAAGAAGCCGCACCGCTTCCGCCCCGGCACCGTCGCGCTCC
GCGAGATCCGCAAGTACCAGAAGAGCACCGAGCTGCTCATCCGCAAGCTCCCCTTCCAGC
GCCTGGTGCGGGAGATCGCGCAGGACTTCAAGACCGACCTCCGCTTCCAGAGCTCCGCCG
TCTCCGCGCTCCAGGAGGCAGCCGAGGCATACCTCGTCGGGCTCTTCGAGGACACCAACC
TCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCC
GCATCCGCGGCGAGAGGGCCTAGGTTGCTTCGTTCGTAGTTGTTGTCTGGTCTGGATGTG
TAGAGATGGTGGCTTCCGTCTTAGTGGGGACTCATCTTGTATCGTGGTAGGAGGATCCCT
CGTTCGTGCCAGCATGTTCTTTCTGTGCTGTCTGATGTTACCCTCTTGTTGCCATCAGCA
ATGTGAAAGTTGGCTCTCAGAAAAAAAAAAAAAAAAAAAAAAGTCATGCCCTTTGCTGTT
TCCAAACCTCAAATGTCAACGAACGCCATTTTTGTTGGTAGAAATTTCTTGGAATTTGAG
CATGAAACCCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14068 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g05730.1	137	5e-86	protein\|histone H3, putative, expressed
Brachypodium v1_2	Bradi4g07840.1	137	8e-87
Arabidopsis v10	AT5G65360.1	136	2e-86	Histone superfamily protein \| chr5:26120099-26120509 REVERSE LENGTH=136