barSeed - Barley Seed Development Database

Probe CUST_6653_PI390587928

Source Contig U35_757

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6653_PI390587928	Hv_44K_v2	TGCTTGCTTGCTCAAGGTTCAACATTTCAATGAAATTTCACCTGCTGGCCTACCAAAAAA	399	GeneList: thistle1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.358	1.133	0.616	0.552	1.150	1.024
Raw	14.200	9.202	2.312	4.173	2.697	2.672

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC04424	1362	6e-22	1208 - 1268	97	59 / 61	plus	ABC04424
Harvest35	U35_757	554	3e-25	400 - 459	100	60 / 60	plus

Contig Sequence (554 bp)

>U35_757 554 Hv_44K_v2
AGGCGCTGGTGAACAGCCAGGGCGTCTTCACCTCCGACATGGTGCTCATCAAGGACCGAA
CCACGGCGCCCATCGTGCAGCAGTTCGCGCGGAGCAAGGACGCCTTCTTCGCGCAGTTCG
CCAAGTCCATGGCCAAGCTCGCCACCGCGCCGAGGCCCGGCGGGAACGTCGGCGAGATCC
GCCGCAACTGCTTCAGCCCCAACGCCCTGCGCGCCATCGACACCGTCGTCGACGCCGGCG
AGGAGGAAGGATTCGCGGCTTCTGCCTGATTTGCGTGCGTGCATTTGCTGGCACGTGCAT
GGCTTCGTGTATGTTAGCTGTTAATTTCTGCTCGCGTGTGTGCGTGTTCGTGCTTTGGAT
CTGTAGTGTAATAAGAGACTTCATCAGTGAGTCGCTGAGTGCTTGCTTGCTCAAGGTTCA
ACATTTCAATGAAATTTCACCTGCTGGCCTACCAAAAAAAAAAAAAACTCGAAATTTTGG
ACCAGATTCAAACTTGTTTCAAACGAAAAAAAAAAAAAAAAAGGACAAGATTCGTCTAAA
AAAAAAAAAAAAAA

Homology of Contig U35_757 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None