barSeed - Barley Seed Development Database

Probe CUST_6652_PI390587928

Source Contig U35_758

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6652_PI390587928	Hv_44K_v2	GCTAGCTTACTCCACACTCCACACCCACCGCATCGCACCAACAATGGCGATGGCGAGCAG	28	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.720	0.588	1.345	4.964
Raw	2.602	2.587	2.750	3.516	3.290	20.904

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4683.1	1338	2e-24	162 - 221	100	60 / 60	plus	ABC04423 ABC04424 ABC04425
MLOC	MLOC_4683.2	843	2e-24	17 - 76	100	60 / 60	plus	ABC04424
JLOC1	JLOC1_2948.1	1475	8e-25	99 - 158	100	60 / 60	plus
Harvest35	U35_758	615	3e-25	29 - 88	100	60 / 60	plus

Contig Sequence (615 bp)

>U35_758 615 Hv_44K_v2
TGGAAAGCCACACGCCTAGCCTTAGCTAGCTAGCTTACTCCACACTCCACACCCACCGCA
TCGCACCAACAATGGCGATGGCGAGCAGCAGGGGCGGCGCCGGCGCACTGGTTCTGGCCT
TCGTGACCGTCGCAGTGCTGGTCTCCCCCGCGCTGTCCGCCCCTCTGGACGGAGCCGGCT
TCCACTCGGCAACGTGCCCGCAGCTGGAGAGCATCGTGCTGTCCTCCGTGCAGGCGGCGC
TCCAGCGCGACGTGGCGCTCGCCGCCGGCCTCCTCCGCATCTTCTTCCACGACTGCTTCC
CGCAGGGCTGCGACGCGTCCGTGTACCTCAAGGGCAGAGGCACGGAGCAGACTATGGGAC
CCAACACCACGCTGCAGCCGCGCGCGCTGCAGCTCGTCGAAGACATCCGCGCCAAGGTGC
ACGCCGCGTGCGGCCCCACCGTGTCCTGCGCCGACATCTCCGCCCTCGCCACCCGCGACG
CCGTCGTGCTCTCCGGCGGGCCCAACTACACCGTGCCCCAGGGCCAGTTCGACAGCCTCG
CCCCAGCGTCCGAGAACGTCGTCGACGGCCTGCCGTCGCCGGCCACCGACAGCGTCACCA
TCCTCGCGCGCGCCT

Homology of Contig U35_758 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g59260.1	339	2e-72	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi5g27210.1	344	6e-82
Arabidopsis v10	None