barSeed - Barley Seed Development Database

Probe CUST_6651_PI390587928

Source Contig U35_759

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6651_PI390587928	Hv_44K_v2	TCACTGAGTGCTTGCTTGCTCAAGGTTCAACATTTCAACGAAATTTCACCTGGTGGGGTA	1211	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354769	1400	2e-24	1211 - 1270	100	60 / 60	plus	ABC04423 ABC04424 ABC04425
MLOC	MLOC_60133.1	1049	2e-24	205 - 264	100	60 / 60	minus	ABC04423 ABC04424 ABC04425
JLOC1	JLOC1_39186.1	1065	8e-25	221 - 280	100	60 / 60	minus
Harvest21	ABC04425	640	3e-25	139 - 198	100	60 / 60	minus	ABC04425
Harvest35	U35_759	1406	3e-25	1212 - 1271	100	60 / 60	plus

Contig Sequence (1406 bp)

>U35_759 1406 Hv_44K_v2
GCAAGCCACACGCTTAGCTTAGCCTTAGCTAGCTAGCTTACTCCACAGTGCGCAAAGCAC
ACCACATCAACGATGGCGACTACGGGCAGCCGTAGTACACTGGTTCTGGTCTATCTGACC
GTCGCAGTGCTAGTCTCCCCTGCCCTGTCCGCCCCTCTGGACGGCGCCGGCTTCCACTCG
GCGACGTGCCCGCAGCTGGAGAGCATCGTGTTCTCCTCCGTGCAGGCGGCGCTCCAGCGG
GAGGTGGCGCTCGCCGCCGGCCTGCTCCGCATCTTCTTCCACGACTGCTTCCCGCAGGGC
TGCGACGCGTCCGTGTACCTCAAGGGCAGAGGCACGGAGCAGGCCATGGGGCCCAACACC
ACGCTGCAGCCGCGGGCGCTGCAGCTCGTGGAGGACATCCGCGCCAAGGTGCACGCCGCG
TGCGGCCCCACCGTGTCCTGCGCCGACATCTCGGCGCTCGCCACCCGCGACGCCGTCGTG
CTCTCCGGCGGGCCCAACTACACGGTACCGCAGGGCCAGTTCGACAGCCTCGCCCCGGCG
TCTCAGAACGTCGTCAATGGCCTCCCGTCGCCGGCGACCTCCAGCGTATCCGCCCTCGCG
CGCGCCTTCAGCGGCAAGGGCCTCCGTGACCTGGCCGACCTGGTGGCGCTCTCCGGCGCG
CACACCGTCGGGAGGACTGGCTGCCCGTTCTTCCGTGACCGGGCTCAGCGCATGGACGAC
GCCTTCTCCCGGAGGCTGGCGGCCAACTGCAGCGCGGCCCCGAACCGGCTCCAGAACCTG
GACGTGGTGACCCCCGACCTGTTCGACAACGGCTACTACAAGGCGCTGGTGAACAGCCAG
GGCGTCTTCACCTCCGACATGGTGCTCATCAAGGACCGAACCACGGCGCCCATCGTGCAG
CAGTTCGCGCGGAACAAGGACGCCTTCTTCGCGCAGTTCGCCAAGTCCATGGCCAAGCTC
GCCACCGCGCCGAGGCCCGGCGGGAACGTCGGCGAGATCCGCCGCAACTGCTTCAGCCCC
AACGCCCTGCGCGCCATCGACACCGTCGTCGAGGCCGGCGAGGAGGAAGGATTCACGGCT
TCTGCCTGATTTGCGTGCGTGCATTTGCTGGCACGTGCATGGCTTCGTGTATGTTAGCTG
TTAATTTCTGCTCGCGTGTGTGCGTGTTCGTGCTTTGGATCTGTAGTGTAATAAGAGACT
TCATCAGTGAGTCACTGAGTGCTTGCTTGCTCAAGGTTCAACATTTCAACGAAATTTCAC
CTGGTGGGGTACCGAAAAAAAAAAAAAAAAAAATTTTGGACCAGATTCAAACTAGTTTCA
AACCAATTTTAAAAAAAAAAAAAAAAATTCGTCAAAAGTAAGTGGATTTCAATAGATGGA
AGTACGACACAAAAAAAAAAAAAAAA

Homology of Contig U35_759 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g59260.1	339	2e-151	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi5g27210.1	344	5e-176
Arabidopsis v10	AT1G71695.1	358	7e-70	Peroxidase superfamily protein \| chr1:26964359-26966557 FORWARD LENGTH=358