barSeed - Barley Seed Development Database

Probe CUST_6608_PI390587928

Source Contig U35_776

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6608_PI390587928	Hv_44K_v2	GTGTGATTGATATTTTTAGATGAATGTGGAAAATCTGGTGGGAAACCTTTGGTTGGAAAA	1149	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	8.722	4.609	1.433	0.582	0.263	0.273
Raw	10024.850	7887.927	2202.170	1322.853	230.187	259.578

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7424.1	1556	2e-23	25 - 82	100	58 / 58	minus	ABC14547 ABC26356
MLOC	AK361903	1735	3e-22	1680 - 1735	100	56 / 56	plus	ABC14547 ABC26356
JLOC1	JLOC1_4893.1	1678	1e-23	1474 - 1531	100	58 / 58	plus
Harvest21	ABC14547	1221	3e-25	1149 - 1208	100	60 / 60	plus	ABC14547
Harvest35	U35_776	1222	3e-25	1150 - 1209	100	60 / 60	plus

Contig Sequence (1222 bp)

>U35_776 1222 Hv_44K_v2
GATCAGTTGAACTCATTGTTTTGTGGTTTTGGGGTTACGATCCTATAGGGCTTTGTACAA
GGCCAACTGCTTCCACAGCAAGGGCCACTCTGCCGACTGCGGCGTGTACACCACCATGTA
CATGGTCGTGTTTGGGATCTCCCAGATCGTCTTCTCCCAGCTCCCCAACCTCCACGAGAT
TTCTCTGGCTGTTGATGCTCGCCGCCGTCATGTCCTTCTCCTACTCCACCATCGGCGTTG
GCCTCTCCTTGGCACAGACCATCAAAGGTCCTACGGGCAAGACAACCATTGGTGGCACTC
AAATTGGGGTGGACGTCACTTCGGCCCAGAAGATATGGCTGACATTGCAAGCGCTCGGGA
ACATCGCATTCGCCTACTCATACTCCATGGTTCTCATAGAAATCCAGGACACGGTGAAGG
CGCCACCGGCGGAGAACAAGACGATGAGGAAGGCGAACCTGATGGGGGTCTCCACCACCA
CGGCCTTCTACATGCTCTGCGGCTGCCTCGGCTACTCGGCCTTCGGCAACGACGCGCCGG
GCAACATGCTGACCGGCTTCGGCTTCTACGAGCCCTTCTGGCTCATCGACTTCGCCAACG
TGTGCATCGTGGTGCACCTCGTGGGCGCCTACCAGGTGTACTGCCAGCCCATCTACGCCG
CCGTGGAGAGCTGGGCCGCGGGGCGGTGGCCCAACTCGGAGTTCGTCGTCCGGCAGTACC
ACCCCTTCTCCGGCACGTTCAGCCTCAACATGTTCAGGCTGGTGTGGAGGACGGCGTTCG
TGATCGTGAGCACGGTGCTCGCCATCTCGCTGCCCTTCTTCAACGACATCCTCGGGCTGC
TCGGCGCGCTCGGCTTCTGGCCGCTCACCGTCTACTTCCCCGTGGAGATGTACATCTCGC
AGAGCAAGATGAAGAAGTACTCCAGGAAGTGGGTGGCGCTGCAGACCCTGAGCTTCGCCT
GCTTCGCGGTCACGGTGGCCGTCACCGTCGCCTCCATCCAGGGCATCACCCAGTCGCTCA
AGAACTATGTGCCGTTCAAGACCAAGTTGTGAATGGGATGATTAGCTTAGCTGTTGAGTA
GAGATTCGTTGACTTGTGTTTGTTTAAGATTTTTCTCGAGAAAAAGCTCGTCATCTGTGG
ACTGTATCTGTGTGATTGATATTTTTAGATGAATGTGGAAAATCTGGTGGGAAACCTTTG
GTTGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_776 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g36180.1	488	5e-142	protein\|amino acid transporter, putative, expressed
Brachypodium v1_2	Bradi1g45180.1	489	2e-153
Arabidopsis v10	AT5G49630.1	481	1e-116	\| Symbols: AAP6 \| amino acid permease 6 \| chr5:20142681-20146441 REVERSE LENGTH=481