barSeed - Barley Seed Development Database

Probe CUST_6607_PI390587928

Source Contig U35_777

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6607_PI390587928	Hv_44K_v2	TAACCTGACTATTTGAATGATTTGAACAAAGTTGTGCTCATGGTGTCATACGTATCGATA	1444	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375388	1449	6e-24	1358 - 1416	100	59 / 59	plus	ABC02995 ABC07672 ABC35448
JLOC1	JLOC1_53223.1	1850	3e-24	1661 - 1719	100	59 / 59	plus
Harvest21	ABC02995	1560	1e-24	1445 - 1503	100	59 / 59	plus	ABC02995
Harvest35	U35_777	1560	3e-25	1445 - 1504	100	60 / 60	plus

Contig Sequence (1560 bp)

>U35_777 1560 Hv_44K_v2
GCTGCAGGGTTCTCATCCACTCCCCTACCTCCCCCTTTCCTCTCTCCTTCCCCACCCCAC
CCCACCCCACCCGCCCCCCCCCAATCCCGATCTCTCTCGCCCCGCTCATGCATGAGAGGT
CGCCGGGGCCATCGCTAGCCGCCGCCGCCACGCGCCTCCGCTCCGCCTCCCTGGTCCTGC
TGCTCCTGTCGCTGTCCCTGCTCGCCGGGCCGGCGCGCTGCTGGTGGTGCCGCGAGGACG
ACGAGGGGTGCTCCCTCATGGGGTTCAGGGGCGACGACTCGCCGGCCACCGGAGGCGGGA
TCAGTGAAAAAGGCAGGTTCAGTTATGGGTTCGCAAGCTGTGCTGGGAAAAGGGCATCAA
TGGAGGATTTCTACGAGACAAGAGTGGATGATGTTGATGGAGAGACTGTTGGGTTGTTTG
GCGTATTTGATGGTCACGGTGGAGCTCGAGCAGCTGAATATGTGAAGAAGCACCTTTTCA
GCAATTTAATCAAGCATCCGAAATTCATGACAGATACAAAGGCTGCTATTGCTGAAACAT
TCAATCATACCGATTCAGAGTTTCTGAAAGCTGATAGTAGCCACACCAGAGATGCTGGCT
CAACTGCCTCAACAGCTATTCTTGTCGGTGGTCGTTTGGTGGTTGCAAATGTTGGTGATT
CTAGAGCTGTTGTTTCTAAAGGAGGGAAGGCTATTGCGGTTTCCAGGGATCACAAACCTG
ACCAGACAGACGAGAGACAGAGAATTGAGGAAGCTGGAGGCTTTGTGATGTGGGCTGGGA
CATGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCCTTTGGTGATAAACTTTTAAAGC
AGTATGTTGTAGCTGACCCAGAGATCAAGGAGGAGGTGGTCGACAGCTCACTCGAATTCC
TCATCCTCGCTAGTGACGGGCTGTGGGATGTTGTAACTAACGATGAAGCTGTTGCCATGG
TCAAGCCAATAGAGGATCCAGAGCAAGCAGCGAAGGGACTACTTCAAGAAGCTTCCCGAA
GGGGCAGTGCTGACAACATCACCGTCGTCATTGTTCGCTTCTTGGACGGAACGACGACGT
CTGCCGGAGATGGACCGAGTGAGGAGGTCGCCAAGGACCAAAGTGAGGATGTCGCCAAGG
ACCAATCTTCATAGTTCCTGTTCCTCCATGGCGTTGTATCTGCTGTTGTATCTGATGCTC
GAAGTAGATGCCATGTGGCGGCGCCCTCCCGTGCTGCAAAACCAAAACTGACTTGGCCTG
AGTTTCGTCGTTGTTCCATGCTCCCAGCTATCCTAGATGGTAGGTAATGTTGGAACACAG
GGATGGTGGGGGCAGTGTTACCATATGATCCAAGGGGTACCTTTTCTTTCTTCATGCTGA
ACCTTGTACTGTGTAGCTTCTATGCTGGTGTTTCATGCTAGTGATTTTTAGCAGTAAATG
CATGTAACCTGACTATTTGAATGATTTGAACAAAGTTGTGCTCATGGTGTCATACGTATC
GATAATATTGAAGTTTAACTCTTAATAAAGCATTGTAAAAACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_777 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g05630.1	349	6e-175	protein\|protein phosphatase 2C, putative, expressed
Brachypodium v1_2	Bradi3g03870.5	347	0.0
Arabidopsis v10	AT5G10740.1	354	8e-148	Protein phosphatase 2C family protein \| chr5:3393797-3395848 REVERSE LENGTH=354