barSeed - Barley Seed Development Database

Probe CUST_6574_PI390587928

Source Contig U35_45465

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6574_PI390587928	Hv_44K_v2	TAGAGTACAAGAACATTAGTTTCACCGTTTGGGATGTTGGGGGTCAGGACAAGATCAAGC	452	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252968.1	1082	3e-21	345 - 401	98	56 / 57	plus	ABC00200 ABC00395 ABC00969 ABC01008 ABC49757
MLOC	MLOC_71884.1	1026	3e-21	576 - 632	98	56 / 57	minus	ABC00200 ABC00395 ABC00969 ABC01008 ABC49757
JLOC1	JLOC1_47795.1	1328	2e-21	378 - 434	98	56 / 57	plus
Harvest21	ABC44390	542	3e-25	453 - 512	100	60 / 60	plus
Harvest21	ABC00200	1214	1e-23	324 - 380	100	57 / 57	plus	ABC00200
Harvest21	ABC48679	554	2e-22	309 - 365	98	56 / 57	plus
Harvest35	U35_45465	542	3e-25	453 - 512	100	60 / 60	plus
Harvest35	U35_13916	1307	1e-23	344 - 400	100	57 / 57	plus

Contig Sequence (542 bp)

>U35_45465 542 Hv_44K_v2
TCTCCTCCCCTTCCGGTTCGGGTTCCTGGTTCGGTTCGGGTTCGGTTCGGTTCGGGTCCG
AGAGACAGTAGCTAGCCTAGCCTAGGGTTTTCGTAGGAGGAGAAGGAGAGGAGGAGATCC
ATGGCGGAGACGGAGTACCGCTGCTTCGTGGGCGGCCTCGCCTGGGCCACCGACGACCAC
AACCTCCAGGCCGCCTTCAGCCAGTACGGCGAGATCCTCGACGCCAAGATCATCAACGAC
CGCACGCACAGGGCAGCAGCCGTCGCGATCCCGCGCAGGAGCGGACATGGGGCTCACGTT
CACTAAGCTGTTCAGTCGGCTCTTCGCCAAGAAGGAGATGAGGATCCTCATGGTCGGTCT
CGATGCGGCTGGTAAGACCACCATCCTCTACAAGCTCAAGCTCGGAGAGATCGTCACCAC
CATCCCCACAATCGGGTTTAATGTTGAAACTGTAGAGTACAAGAACATTAGTTTCACCGT
TTGGGATGTTGGGGGTCAGGACAAGATCAAGCCCCTGTGGAGGCACTACTTTCAGAACAC
CC

Homology of Contig U35_45465 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g41060.1	182	7e-54	protein\|ADP-ribosylation factor, putative, expressed
Brachypodium v1_2	Bradi1g04220.2	182	3e-54
Arabidopsis v10	AT5G14670.1	188	2e-53	\| Symbols: ATARFA1B, ARFA1B \| ADP-ribosylation factor A1B \| chr5:4729319-4730495 FORWARD LENGTH=188