barSeed - Barley Seed Development Database

Probe CUST_6561_PI390587928

Source Contig U35_45481

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6561_PI390587928	Hv_44K_v2	TTTCTGGTCCTAAAATTCCAAGAGCGTTTCATTCTATGTAGTTGCTCGCCGAGCTCCTTC	233	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369429	1162	2e-24	944 - 1003	100	60 / 60	plus	ABC11624 ABC11625 ABC44428
MLOC	MLOC_7434.2	1636	2e-24	213 - 272	100	60 / 60	minus	ABC11624 ABC11625 ABC44428
MLOC	MLOC_7434.3	1006	2e-24	211 - 270	100	60 / 60	minus	ABC11624 ABC11625 ABC44428
MLOC	MLOC_7434.1	2070	2e-24	1157 - 1216	100	60 / 60	minus	ABC11624 ABC11625 ABC15764 ABC44428
JLOC1	JLOC1_4897.1	2338	8e-25	815 - 874	100	60 / 60	plus
Harvest21	ABC44428	488	3e-25	234 - 293	100	60 / 60	minus	ABC44428
Harvest35	U35_45481	488	3e-25	234 - 293	100	60 / 60	minus

Contig Sequence (488 bp)

>U35_45481 488 Hv_44K_v2
TTTTTTTTTTTTTTTTAACTGCTCAAAATTCTTTATTCAATGGTGCTGGACCGATAACTA
TTTCCATGGTTACTGCTCCGATACAAAGTGAAACATTTCATGCATCTACGATGGATGCAG
GATTTGACAATCTGTCGTATGATGGTTTTACCGTTCATACCCCTGGTTATTGATGACACT
CATCTATCACCGTAGGACAAAGTAGCTGCATACAGGATGAGATTCTCTTTTGTGAAGGAG
CTCGGCGAGCAACTACATAGAATGAAACGCTCTTGGAATTTTAGGACCAGAAATATACTG
CGAAAGCCGAAAGACAGGCTGTGGAAATCACAGTGCCCTCATCGCCTTGATCCAATCGAT
GTCTAATCTAAAATCGCCTGGCCCAGTCTTAGCACCAGGAACGCCGCCTTCTGCATTTAA
CGAGACAGACATTCCCACGACGCGAGAAGGATTCATTTCCATCTCCGCTTCGATCACGTT
TCCTTTCC

Homology of Contig U35_45481 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None